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Print Publications

Refereed Scientific Publications

• Proceedings of IEEE: The Physiome and Beyond. Eds.: Dr. James B. Bassingthwaighte, University of Washington, Seattle, WA, USA, Dr. Jean-Louis Coatrieux, Université de Rennes, Rennes, France, 94, 2006.
• Hunter P, Smith N, Fernandez J and Tawhai M. Integration from proteins to organs: the IUPS Physiome Project. Mech Ageing Dev 126: 187-192, 2005.
• Crampin EJ, Halstead M, Hunter P, Nielson P, Noble D, Smith N, and Tawhai M. Computational physiology and the physiome project. Exp Physiol 89: 1-26, 2004.
• Bassingthwaighte JB. The macro-ethics of genomics to health: The Physiome Project. Comptes  Rendus de l'Academie francaise, 326: 1105-1110, 2003.
• Bassingthwaighte JB. The modeling of a primative "sustainable" conservative cell. Phil Trans Roy Soc Lond A 359: 1055-1072, 2001.
  Bassingthwaighte JB.  Strategies for the Physiome Project. Ann Biomed Eng 28:1043-1058, 2000.
• Bassingthwaighte JB, Qian H, and Li Z. The Cardiome Project: An integrated view of cardiac metabolism and regional mechanical function. Adv Exp Med Biol 471:541-553, 1999.
• Bassingthwaighte JB, Goresky CA, and Linehan JH (Editors). Whole organ approaches to cellular metabolism. Capillary permeation, cellular uptake and product formation. New York: Springer Verlag, 1998.
• Bassingthwaighte JB, Li Z, and Qian H. Blood Flows and Metabolic Components of the Cardiome. Prog Biophys Mol Biol 69:445-461, 1998.
• McCulloch A, Bassingthwaighte JB, Hunter P, and Noble D. Editorial: Computational biology of the heart: from structure to function. Prog Biophys Mol Biol 69:153-155, 1998.
• McCulloch A, Bassingthwaighte JB, Hunter P, and Noble D. Computational Biology of the Heart: From Structure to Function Progress in Biophysics and Molecular Biology Volume 69, 151-572: Elsevier/Pergamon, 1998.
• Bassingthwaighte JB. Toward modeling the human physionome. In: Molecular and Subcellular Cardiology: Effects on Structure and Function. Sideman S, and Beyar R (Editors). New York: Adv Exp Med Biol Vol 382, Plenum Press, 1995.
• Boyd CAR and Noble D (Editors). The Logic of Life: The Challenge of Integrative Physiology. New York: Oxford University Press, 1993.
• Bassingthwaighte JB. Fractal vascular growth patterns. Acta Stereol. 11 (Suppl. 1): 305-319, 1992.
• Glass L, Hunter P, and McCulloch A. Theory of Heart: Biomechanics, Biophysics, and Nonlinear Dynamics of Cardiac Function. New York: Springer-Verlag, 1991.
• Glass L and Hunter P. There is a theory of heart. Physica D 43: 1-16, 1990.
• Bassingthwaighte JB, Noodleman L, Eakin RT, and King RB. Integrated phenomenology of transport, permeation, and metabolic reactions in the heart. In: Activation, Metabolism and Perfusion of the Heart. Simulation and Experimental Models.  Sideman S and Beyar R (Editors). Dordrecht: Martinus Nijhoff, 1987.

News Publications

• The doctor will see your prototype now. Wired, February 13, 2005.
• Anonymous. The heart of the matter. The Economist Technology Quarterly, December 8, 2001, p. 21-23.

Reports

• White RJ, Bassingthwaighte JB, Charles JB, Kushmerick MJ, and Newman DJ. Issues of exploration: Human health and well being during a mission to Mars. COSPAR, 2000.
• Higgins G, Athey B, Bassingthwaighte JB, Burgess J, Champion H, Cleary K, Dev P, Duncan J, Hopmeier M, Jenkins D, Johnson C, Kelly H, Leitch R, Lorensen W, Metaxas D, Spitzer V, Vaidehi N, Vosburgh K, and Winslow R. Modeling and simulation in medicine: Toward an integrated framework. July 20-21, 2000, National Library of Medicine, National Institutes of Health, Bethesda, Maryland. Comput Aided Surg 6: 32-39, 2001.
• Bassingthwaighte JB. Developing efficiency in characterizing drug and substrate reaction schemes. In: Advances in the use of computer simulation and in vitro techniques reducing the use of whole animals in testing: IBC USA Conferences Inc, 1991, p. 1-10.
• Bassingthwaighte JB, Friesner R, Honig B, Starmer CF, and Marmarelis VZ. Modeling and Simulation. Bethesda MD: NIH/NCRR Workshop on Technologies for the Future: Biomedical Computing for Visualization, Modeling and Decision Support, April 12-13, 1991, p. 1-15.

[This page was last modified 13Jun06, 8:48 am.]

Model development and archiving support at physiome.org provided by the following grants: NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.