Academic Software License Agreement

JSim Software (Source Code)

 

The University of Washington ("UW") and Dr. James B. Bassingthwaighte and 
Erik Butterworth ("Developers") give permission for ("you") and your 
institution ("Institution") to use the JSim software ("Software"). JSim 
software is a Java-based simulation system for building quantitative 
numeric models and analyzing them with respect to experimental reference 
data. UW and the Developers allow you and your Institution to access 
Software source code, and run, copy and modify Software for non-profit 
research purposes, on the following conditions:

If you wish to obtain Software for any commercial purposes, you will need 
to execute a separate licensing agreement with UW and pay a fee. This 
includes, but is not limited to, using Software to provide services to 
outside parties for a fee.

You retain in Software and any modifications to Software, the copyright, 
trademark, or other notices pertaining to Software as provided by UW.

You may redistribute Software and your modifications of Software to users 
in non-profit entities. You may not redistribute Software or your 
modifications of Software to users at commercial entities unless you first 
obtain permission from UW.

You acknowledge that the Developers, UW and its licensees may develop 
modifications to Software that may be substantially similar to your 
modifications of Software, and that the Developers, UW and its licensees 
shall not be constrained in any way by you or your Institution in UW's or 
its licensees' use or management of such modifications.

If utilization of the Software results in outcomes which will be 
published, please specify the version of Software you used and cite source 
as follows:

  JSim software (version 1.6.xx) was developed at the National 
  Simulation Resource(physiome.org) at the University of Washington with 
  support from NIH grant ROI EB 001973.

Any risk associated with using the Software at your Institution is with 
you and your Institution. Software is experimental in nature and is made 
available as a research courtesy "AS IS," without obligation by UW to 
provide accompanying services or support.

UW AND THE DEVELOPERS EXPRESSLY DISCLAIM ANY AND ALL WARRANTIES REGARDING 
THE SOFTWARE, WHETHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO 
WARRANTIES PERTAINING TO MERCHANTABILITY, NON-INFRINGEMENT OR FITNESS FOR 
A PARTICULAR PURPOSE.

Certain third party software is integrated in Software. Table 1 lists the 
third party software and their associated license agreements.  You and you 
Institution agree to comply with the license agreements for the third 
party software listed in Table 1 as a condition of UW providing Software 
to you and your Institution.

Table 1

For your convenience, the source distribution of
Software also contains third party software in addition
to JSim as listed in Table 2.  You and your Institution
understand and agree to the applicable license
agreements in Table 2 as a condition of UW providing
Software to you and your Institution.

Table 2



External code
License Name
License URL
Distribution format



Java
Sun Microsystems, inc.
Binary code license agreement

http://www.java.com/en/download/license.jsp
binary



CUP parser generator
CUP Parser Generator Copyright Notice, License, and Disclaimer
http://www.cs.princeton.edu/~appel/modern/java/CUP/#LICENSE
binary



JLex lexical analyzer generator
Jlex copyright notice, license and disclaimer
http://www.cs.princeton.edu/~appel/modern/java/JLex/#LICENSE
binary



Scientific Graphic Toolkit
U.S. Department of Commerce (DOC)
Software License for EPIC Software
http://www.epic.noaa.gov/java/license.html
binary



Xerces2 Java-based XML Parser
Apache license, version 2.0
http://www.apache.org/licenses/LICENSE-2.0.html
binary



JigCell SBML Parser

https://biospice.org/BioCOMPLicense.html
binary



JAMA

http://math.nist.gov/javanumerics/jama/
binary



Apple Java Application Stub

/System/Library/Frameworks/JavaVM.framework/Resources/Documentation/JavaApplicationStub-License.rtf
binary