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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism aau: Arthrobacter aurescens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
aau00010 Glycolysis / Gluconeogenesis SBML MML
aau00020 Citrate cycle (TCA cycle) SBML MML
aau00030 Pentose phosphate pathway SBML MML
aau00031 (Undocumented) SBML MML
aau00040 Pentose and glucuronate interconversions SBML MML
aau00051 Fructose and mannose metabolism SBML MML
aau00052 Galactose metabolism SBML MML
aau00053 Ascorbate and aldarate metabolism SBML MML
aau00061 Fatty acid biosynthesis SBML MML
aau00062 Fatty acid elongation in mitochondria SBML MML
aau00071 Fatty acid metabolism SBML MML
aau00072 Synthesis and degradation of ketone bodies SBML MML
aau00100 (Undocumented) SBML MML
aau00120 (Undocumented) SBML MML
aau00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
aau00150 Androgen and estrogen metabolism SBML MML
aau00220 (Undocumented) SBML MML
aau00230 Purine metabolism SBML MML
aau00240 Pyrimidine metabolism SBML MML
aau00251 (Undocumented) SBML MML
aau00252 (Undocumented) SBML MML
aau00260 Glycine, serine and threonine metabolism SBML MML
aau00271 (Undocumented) SBML MML
aau00272 (Undocumented) SBML MML
aau00280 Valine, leucine and isoleucine degradation SBML MML
aau00281 Geraniol degradation SBML MML
aau00290 Valine, leucine and isoleucine biosynthesis SBML MML
aau00300 Lysine biosynthesis SBML MML
aau00310 Lysine degradation SBML MML
aau00311 Penicillin and cephalosporin biosynthesis SBML MML
aau00330 Arginine and proline metabolism SBML MML
aau00340 Histidine metabolism SBML MML
aau00350 Tyrosine metabolism SBML MML
aau00360 Phenylalanine metabolism SBML MML
aau00361 gamma-Hexachlorocyclohexane degradation SBML MML
aau00362 (Undocumented) SBML MML
aau00363 Bisphenol A degradation SBML MML
aau00364 Fluorobenzoate degradation SBML MML
aau00380 Tryptophan metabolism SBML MML
aau00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
aau00401 Novobiocin biosynthesis SBML MML
aau00410 beta-Alanine metabolism SBML MML
aau00430 Taurine and hypotaurine metabolism SBML MML
aau00450 Selenoamino acid metabolism SBML MML
aau00460 (Undocumented) SBML MML
aau00471 D-Glutamine and D-glutamate metabolism SBML MML
aau00473 D-Alanine metabolism SBML MML
aau00480 Glutathione metabolism SBML MML
aau00500 Starch and sucrose metabolism SBML MML
aau00510 (Undocumented) SBML MML
aau00520 Amino sugar and nucleotide sugar metabolism SBML MML
aau00521 Streptomycin biosynthesis SBML MML
aau00523 Polyketide sugar unit biosynthesis SBML MML
aau00530 (Undocumented) SBML MML
aau00540 Lipopolysaccharide biosynthesis SBML MML
aau00550 Peptidoglycan biosynthesis SBML MML
aau00561 Glycerolipid metabolism SBML MML
aau00562 Inositol phosphate metabolism SBML MML
aau00564 Glycerophospholipid metabolism SBML MML
aau00565 Ether lipid metabolism SBML MML
aau00590 Arachidonic acid metabolism SBML MML
aau00592 alpha-Linolenic acid metabolism SBML MML
aau00600 Sphingolipid metabolism SBML MML
aau00620 Pyruvate metabolism SBML MML
aau00622 Toluene and xylene degradation SBML MML
aau00623 2,4-Dichlorobenzoate degradation SBML MML
aau00624 1- and 2-Methylnaphthalene degradation SBML MML
aau00626 Naphthalene and anthracene degradation SBML MML
aau00627 1,4-Dichlorobenzene degradation SBML MML
aau00628 Fluorene degradation SBML MML
aau00630 Glyoxylate and dicarboxylate metabolism SBML MML
aau00632 (Undocumented) SBML MML
aau00640 Propanoate metabolism SBML MML
aau00641 3-Chloroacrylic acid degradation SBML MML
aau00642 Ethylbenzene degradation SBML MML
aau00643 Styrene degradation SBML MML
aau00650 Butanoate metabolism SBML MML
aau00660 C5-Branched dibasic acid metabolism SBML MML
aau00670 One carbon pool by folate SBML MML
aau00680 Methane metabolism SBML MML
aau00710 (Undocumented) SBML MML
aau00720 (Undocumented) SBML MML
aau00730 Thiamine metabolism SBML MML
aau00740 Riboflavin metabolism SBML MML
aau00750 Vitamin B6 metabolism SBML MML
aau00760 Nicotinate and nicotinamide metabolism SBML MML
aau00770 Pantothenate and CoA biosynthesis SBML MML
aau00780 Biotin metabolism SBML MML
aau00785 Lipoic acid metabolism SBML MML
aau00790 Folate biosynthesis SBML MML
aau00791 Atrazine degradation SBML MML
aau00860 Porphyrin and chlorophyll metabolism SBML MML
aau00900 Terpenoid backbone biosynthesis SBML MML
aau00903 (Undocumented) SBML MML
aau00906 Carotenoid biosynthesis SBML MML
aau00910 Nitrogen metabolism SBML MML
aau00920 Sulfur metabolism SBML MML
aau00930 Caprolactam degradation SBML MML
aau00940 (Undocumented) SBML MML
aau00941 (Undocumented) SBML MML
aau00950 (Undocumented) SBML MML
aau00960 (Undocumented) SBML MML
aau00970 Aminoacyl-tRNA biosynthesis SBML MML
aau00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
aau00982 (Undocumented) SBML MML
aau00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.