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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism abc: Acinetobacter baumannii ACICU

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
abc00010 Glycolysis / Gluconeogenesis SBML MML
abc00020 Citrate cycle (TCA cycle) SBML MML
abc00030 Pentose phosphate pathway SBML MML
abc00031 (Undocumented) SBML MML
abc00040 Pentose and glucuronate interconversions SBML MML
abc00051 Fructose and mannose metabolism SBML MML
abc00052 Galactose metabolism SBML MML
abc00053 Ascorbate and aldarate metabolism SBML MML
abc00061 Fatty acid biosynthesis SBML MML
abc00062 Fatty acid elongation in mitochondria SBML MML
abc00071 Fatty acid metabolism SBML MML
abc00072 Synthesis and degradation of ketone bodies SBML MML
abc00100 (Undocumented) SBML MML
abc00120 (Undocumented) SBML MML
abc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
abc00150 Androgen and estrogen metabolism SBML MML
abc00220 (Undocumented) SBML MML
abc00230 Purine metabolism SBML MML
abc00240 Pyrimidine metabolism SBML MML
abc00251 (Undocumented) SBML MML
abc00252 (Undocumented) SBML MML
abc00260 Glycine, serine and threonine metabolism SBML MML
abc00271 (Undocumented) SBML MML
abc00272 (Undocumented) SBML MML
abc00280 Valine, leucine and isoleucine degradation SBML MML
abc00281 Geraniol degradation SBML MML
abc00290 Valine, leucine and isoleucine biosynthesis SBML MML
abc00300 Lysine biosynthesis SBML MML
abc00310 Lysine degradation SBML MML
abc00311 Penicillin and cephalosporin biosynthesis SBML MML
abc00330 Arginine and proline metabolism SBML MML
abc00340 Histidine metabolism SBML MML
abc00350 Tyrosine metabolism SBML MML
abc00360 Phenylalanine metabolism SBML MML
abc00361 gamma-Hexachlorocyclohexane degradation SBML MML
abc00362 (Undocumented) SBML MML
abc00364 Fluorobenzoate degradation SBML MML
abc00380 Tryptophan metabolism SBML MML
abc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
abc00401 Novobiocin biosynthesis SBML MML
abc00410 beta-Alanine metabolism SBML MML
abc00430 Taurine and hypotaurine metabolism SBML MML
abc00440 Phosphonate and phosphinate metabolism SBML MML
abc00450 Selenoamino acid metabolism SBML MML
abc00460 (Undocumented) SBML MML
abc00471 D-Glutamine and D-glutamate metabolism SBML MML
abc00473 D-Alanine metabolism SBML MML
abc00480 Glutathione metabolism SBML MML
abc00500 Starch and sucrose metabolism SBML MML
abc00520 Amino sugar and nucleotide sugar metabolism SBML MML
abc00530 (Undocumented) SBML MML
abc00540 Lipopolysaccharide biosynthesis SBML MML
abc00550 Peptidoglycan biosynthesis SBML MML
abc00561 Glycerolipid metabolism SBML MML
abc00562 Inositol phosphate metabolism SBML MML
abc00564 Glycerophospholipid metabolism SBML MML
abc00565 Ether lipid metabolism SBML MML
abc00590 Arachidonic acid metabolism SBML MML
abc00592 alpha-Linolenic acid metabolism SBML MML
abc00620 Pyruvate metabolism SBML MML
abc00621 (Undocumented) SBML MML
abc00622 Toluene and xylene degradation SBML MML
abc00623 2,4-Dichlorobenzoate degradation SBML MML
abc00624 1- and 2-Methylnaphthalene degradation SBML MML
abc00626 Naphthalene and anthracene degradation SBML MML
abc00627 1,4-Dichlorobenzene degradation SBML MML
abc00628 Fluorene degradation SBML MML
abc00629 Carbazole degradation SBML MML
abc00630 Glyoxylate and dicarboxylate metabolism SBML MML
abc00631 1,2-Dichloroethane degradation SBML MML
abc00632 (Undocumented) SBML MML
abc00633 Trinitrotoluene degradation SBML MML
abc00640 Propanoate metabolism SBML MML
abc00641 3-Chloroacrylic acid degradation SBML MML
abc00642 Ethylbenzene degradation SBML MML
abc00643 Styrene degradation SBML MML
abc00650 Butanoate metabolism SBML MML
abc00660 C5-Branched dibasic acid metabolism SBML MML
abc00670 One carbon pool by folate SBML MML
abc00680 Methane metabolism SBML MML
abc00710 (Undocumented) SBML MML
abc00720 (Undocumented) SBML MML
abc00730 Thiamine metabolism SBML MML
abc00740 Riboflavin metabolism SBML MML
abc00750 Vitamin B6 metabolism SBML MML
abc00760 Nicotinate and nicotinamide metabolism SBML MML
abc00770 Pantothenate and CoA biosynthesis SBML MML
abc00780 Biotin metabolism SBML MML
abc00790 Folate biosynthesis SBML MML
abc00791 Atrazine degradation SBML MML
abc00860 Porphyrin and chlorophyll metabolism SBML MML
abc00900 Terpenoid backbone biosynthesis SBML MML
abc00903 (Undocumented) SBML MML
abc00910 Nitrogen metabolism SBML MML
abc00920 Sulfur metabolism SBML MML
abc00930 Caprolactam degradation SBML MML
abc00940 (Undocumented) SBML MML
abc00950 (Undocumented) SBML MML
abc00960 (Undocumented) SBML MML
abc00970 Aminoacyl-tRNA biosynthesis SBML MML
abc00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
abc00982 (Undocumented) SBML MML
abc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.