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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ace: Acidothermus cellulolyticus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ace00010 Glycolysis / Gluconeogenesis SBML MML
ace00020 Citrate cycle (TCA cycle) SBML MML
ace00030 Pentose phosphate pathway SBML MML
ace00031 (Undocumented) SBML MML
ace00040 Pentose and glucuronate interconversions SBML MML
ace00051 Fructose and mannose metabolism SBML MML
ace00052 Galactose metabolism SBML MML
ace00053 Ascorbate and aldarate metabolism SBML MML
ace00061 Fatty acid biosynthesis SBML MML
ace00062 Fatty acid elongation in mitochondria SBML MML
ace00071 Fatty acid metabolism SBML MML
ace00072 Synthesis and degradation of ketone bodies SBML MML
ace00100 (Undocumented) SBML MML
ace00120 (Undocumented) SBML MML
ace00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ace00220 (Undocumented) SBML MML
ace00230 Purine metabolism SBML MML
ace00240 Pyrimidine metabolism SBML MML
ace00251 (Undocumented) SBML MML
ace00252 (Undocumented) SBML MML
ace00260 Glycine, serine and threonine metabolism SBML MML
ace00271 (Undocumented) SBML MML
ace00272 (Undocumented) SBML MML
ace00280 Valine, leucine and isoleucine degradation SBML MML
ace00281 Geraniol degradation SBML MML
ace00290 Valine, leucine and isoleucine biosynthesis SBML MML
ace00300 Lysine biosynthesis SBML MML
ace00310 Lysine degradation SBML MML
ace00330 Arginine and proline metabolism SBML MML
ace00340 Histidine metabolism SBML MML
ace00350 Tyrosine metabolism SBML MML
ace00360 Phenylalanine metabolism SBML MML
ace00361 gamma-Hexachlorocyclohexane degradation SBML MML
ace00364 Fluorobenzoate degradation SBML MML
ace00380 Tryptophan metabolism SBML MML
ace00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ace00401 Novobiocin biosynthesis SBML MML
ace00410 beta-Alanine metabolism SBML MML
ace00430 Taurine and hypotaurine metabolism SBML MML
ace00450 Selenoamino acid metabolism SBML MML
ace00460 (Undocumented) SBML MML
ace00471 D-Glutamine and D-glutamate metabolism SBML MML
ace00473 D-Alanine metabolism SBML MML
ace00500 Starch and sucrose metabolism SBML MML
ace00510 (Undocumented) SBML MML
ace00520 Amino sugar and nucleotide sugar metabolism SBML MML
ace00521 Streptomycin biosynthesis SBML MML
ace00523 Polyketide sugar unit biosynthesis SBML MML
ace00530 (Undocumented) SBML MML
ace00550 Peptidoglycan biosynthesis SBML MML
ace00562 Inositol phosphate metabolism SBML MML
ace00564 Glycerophospholipid metabolism SBML MML
ace00620 Pyruvate metabolism SBML MML
ace00624 1- and 2-Methylnaphthalene degradation SBML MML
ace00627 1,4-Dichlorobenzene degradation SBML MML
ace00630 Glyoxylate and dicarboxylate metabolism SBML MML
ace00632 (Undocumented) SBML MML
ace00640 Propanoate metabolism SBML MML
ace00641 3-Chloroacrylic acid degradation SBML MML
ace00643 Styrene degradation SBML MML
ace00650 Butanoate metabolism SBML MML
ace00660 C5-Branched dibasic acid metabolism SBML MML
ace00670 One carbon pool by folate SBML MML
ace00680 Methane metabolism SBML MML
ace00710 (Undocumented) SBML MML
ace00720 (Undocumented) SBML MML
ace00730 Thiamine metabolism SBML MML
ace00740 Riboflavin metabolism SBML MML
ace00750 Vitamin B6 metabolism SBML MML
ace00760 Nicotinate and nicotinamide metabolism SBML MML
ace00770 Pantothenate and CoA biosynthesis SBML MML
ace00780 Biotin metabolism SBML MML
ace00785 Lipoic acid metabolism SBML MML
ace00790 Folate biosynthesis SBML MML
ace00791 Atrazine degradation SBML MML
ace00860 Porphyrin and chlorophyll metabolism SBML MML
ace00900 Terpenoid backbone biosynthesis SBML MML
ace00903 (Undocumented) SBML MML
ace00910 Nitrogen metabolism SBML MML
ace00920 Sulfur metabolism SBML MML
ace00930 Caprolactam degradation SBML MML
ace00970 Aminoacyl-tRNA biosynthesis SBML MML
ace00982 (Undocumented) SBML MML
ace00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.