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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism afw: Anaeromyxobacter sp. Fw109-5

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
afw00010 Glycolysis / Gluconeogenesis SBML MML
afw00020 Citrate cycle (TCA cycle) SBML MML
afw00030 Pentose phosphate pathway SBML MML
afw00031 (Undocumented) SBML MML
afw00040 Pentose and glucuronate interconversions SBML MML
afw00051 Fructose and mannose metabolism SBML MML
afw00052 Galactose metabolism SBML MML
afw00061 Fatty acid biosynthesis SBML MML
afw00062 Fatty acid elongation in mitochondria SBML MML
afw00071 Fatty acid metabolism SBML MML
afw00072 Synthesis and degradation of ketone bodies SBML MML
afw00100 (Undocumented) SBML MML
afw00120 (Undocumented) SBML MML
afw00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
afw00220 (Undocumented) SBML MML
afw00230 Purine metabolism SBML MML
afw00240 Pyrimidine metabolism SBML MML
afw00251 (Undocumented) SBML MML
afw00252 (Undocumented) SBML MML
afw00260 Glycine, serine and threonine metabolism SBML MML
afw00271 (Undocumented) SBML MML
afw00272 (Undocumented) SBML MML
afw00280 Valine, leucine and isoleucine degradation SBML MML
afw00281 Geraniol degradation SBML MML
afw00290 Valine, leucine and isoleucine biosynthesis SBML MML
afw00300 Lysine biosynthesis SBML MML
afw00310 Lysine degradation SBML MML
afw00330 Arginine and proline metabolism SBML MML
afw00340 Histidine metabolism SBML MML
afw00350 Tyrosine metabolism SBML MML
afw00360 Phenylalanine metabolism SBML MML
afw00361 gamma-Hexachlorocyclohexane degradation SBML MML
afw00362 (Undocumented) SBML MML
afw00364 Fluorobenzoate degradation SBML MML
afw00380 Tryptophan metabolism SBML MML
afw00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
afw00401 Novobiocin biosynthesis SBML MML
afw00410 beta-Alanine metabolism SBML MML
afw00430 Taurine and hypotaurine metabolism SBML MML
afw00450 Selenoamino acid metabolism SBML MML
afw00460 (Undocumented) SBML MML
afw00471 D-Glutamine and D-glutamate metabolism SBML MML
afw00473 D-Alanine metabolism SBML MML
afw00480 Glutathione metabolism SBML MML
afw00500 Starch and sucrose metabolism SBML MML
afw00520 Amino sugar and nucleotide sugar metabolism SBML MML
afw00521 Streptomycin biosynthesis SBML MML
afw00530 (Undocumented) SBML MML
afw00540 Lipopolysaccharide biosynthesis SBML MML
afw00550 Peptidoglycan biosynthesis SBML MML
afw00561 Glycerolipid metabolism SBML MML
afw00562 Inositol phosphate metabolism SBML MML
afw00564 Glycerophospholipid metabolism SBML MML
afw00592 alpha-Linolenic acid metabolism SBML MML
afw00620 Pyruvate metabolism SBML MML
afw00624 1- and 2-Methylnaphthalene degradation SBML MML
afw00626 Naphthalene and anthracene degradation SBML MML
afw00627 1,4-Dichlorobenzene degradation SBML MML
afw00630 Glyoxylate and dicarboxylate metabolism SBML MML
afw00631 1,2-Dichloroethane degradation SBML MML
afw00632 (Undocumented) SBML MML
afw00640 Propanoate metabolism SBML MML
afw00641 3-Chloroacrylic acid degradation SBML MML
afw00643 Styrene degradation SBML MML
afw00650 Butanoate metabolism SBML MML
afw00660 C5-Branched dibasic acid metabolism SBML MML
afw00670 One carbon pool by folate SBML MML
afw00680 Methane metabolism SBML MML
afw00710 (Undocumented) SBML MML
afw00720 (Undocumented) SBML MML
afw00730 Thiamine metabolism SBML MML
afw00740 Riboflavin metabolism SBML MML
afw00750 Vitamin B6 metabolism SBML MML
afw00760 Nicotinate and nicotinamide metabolism SBML MML
afw00770 Pantothenate and CoA biosynthesis SBML MML
afw00780 Biotin metabolism SBML MML
afw00790 Folate biosynthesis SBML MML
afw00791 Atrazine degradation SBML MML
afw00860 Porphyrin and chlorophyll metabolism SBML MML
afw00900 Terpenoid backbone biosynthesis SBML MML
afw00903 (Undocumented) SBML MML
afw00910 Nitrogen metabolism SBML MML
afw00920 Sulfur metabolism SBML MML
afw00930 Caprolactam degradation SBML MML
afw00940 (Undocumented) SBML MML
afw00941 (Undocumented) SBML MML
afw00950 (Undocumented) SBML MML
afw00970 Aminoacyl-tRNA biosynthesis SBML MML
afw00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
afw00982 (Undocumented) SBML MML
afw00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.