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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism amr: Acaryochloris marina

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
amr00010 Glycolysis / Gluconeogenesis SBML MML
amr00020 Citrate cycle (TCA cycle) SBML MML
amr00030 Pentose phosphate pathway SBML MML
amr00040 Pentose and glucuronate interconversions SBML MML
amr00051 Fructose and mannose metabolism SBML MML
amr00052 Galactose metabolism SBML MML
amr00053 Ascorbate and aldarate metabolism SBML MML
amr00061 Fatty acid biosynthesis SBML MML
amr00062 Fatty acid elongation in mitochondria SBML MML
amr00071 Fatty acid metabolism SBML MML
amr00100 (Undocumented) SBML MML
amr00120 (Undocumented) SBML MML
amr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
amr00220 (Undocumented) SBML MML
amr00230 Purine metabolism SBML MML
amr00240 Pyrimidine metabolism SBML MML
amr00251 (Undocumented) SBML MML
amr00252 (Undocumented) SBML MML
amr00260 Glycine, serine and threonine metabolism SBML MML
amr00271 (Undocumented) SBML MML
amr00272 (Undocumented) SBML MML
amr00280 Valine, leucine and isoleucine degradation SBML MML
amr00281 Geraniol degradation SBML MML
amr00290 Valine, leucine and isoleucine biosynthesis SBML MML
amr00300 Lysine biosynthesis SBML MML
amr00310 Lysine degradation SBML MML
amr00330 Arginine and proline metabolism SBML MML
amr00340 Histidine metabolism SBML MML
amr00350 Tyrosine metabolism SBML MML
amr00360 Phenylalanine metabolism SBML MML
amr00361 gamma-Hexachlorocyclohexane degradation SBML MML
amr00364 Fluorobenzoate degradation SBML MML
amr00380 Tryptophan metabolism SBML MML
amr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
amr00401 Novobiocin biosynthesis SBML MML
amr00410 beta-Alanine metabolism SBML MML
amr00430 Taurine and hypotaurine metabolism SBML MML
amr00440 Phosphonate and phosphinate metabolism SBML MML
amr00450 Selenoamino acid metabolism SBML MML
amr00460 (Undocumented) SBML MML
amr00471 D-Glutamine and D-glutamate metabolism SBML MML
amr00473 D-Alanine metabolism SBML MML
amr00480 Glutathione metabolism SBML MML
amr00500 Starch and sucrose metabolism SBML MML
amr00520 Amino sugar and nucleotide sugar metabolism SBML MML
amr00521 Streptomycin biosynthesis SBML MML
amr00523 Polyketide sugar unit biosynthesis SBML MML
amr00530 (Undocumented) SBML MML
amr00540 Lipopolysaccharide biosynthesis SBML MML
amr00550 Peptidoglycan biosynthesis SBML MML
amr00561 Glycerolipid metabolism SBML MML
amr00562 Inositol phosphate metabolism SBML MML
amr00564 Glycerophospholipid metabolism SBML MML
amr00590 Arachidonic acid metabolism SBML MML
amr00620 Pyruvate metabolism SBML MML
amr00621 (Undocumented) SBML MML
amr00623 2,4-Dichlorobenzoate degradation SBML MML
amr00624 1- and 2-Methylnaphthalene degradation SBML MML
amr00626 Naphthalene and anthracene degradation SBML MML
amr00627 1,4-Dichlorobenzene degradation SBML MML
amr00628 Fluorene degradation SBML MML
amr00630 Glyoxylate and dicarboxylate metabolism SBML MML
amr00631 1,2-Dichloroethane degradation SBML MML
amr00632 (Undocumented) SBML MML
amr00640 Propanoate metabolism SBML MML
amr00641 3-Chloroacrylic acid degradation SBML MML
amr00643 Styrene degradation SBML MML
amr00650 Butanoate metabolism SBML MML
amr00670 One carbon pool by folate SBML MML
amr00680 Methane metabolism SBML MML
amr00710 (Undocumented) SBML MML
amr00720 (Undocumented) SBML MML
amr00730 Thiamine metabolism SBML MML
amr00740 Riboflavin metabolism SBML MML
amr00750 Vitamin B6 metabolism SBML MML
amr00760 Nicotinate and nicotinamide metabolism SBML MML
amr00770 Pantothenate and CoA biosynthesis SBML MML
amr00780 Biotin metabolism SBML MML
amr00790 Folate biosynthesis SBML MML
amr00860 Porphyrin and chlorophyll metabolism SBML MML
amr00900 Terpenoid backbone biosynthesis SBML MML
amr00903 (Undocumented) SBML MML
amr00906 Carotenoid biosynthesis SBML MML
amr00908 (Undocumented) SBML MML
amr00910 Nitrogen metabolism SBML MML
amr00920 Sulfur metabolism SBML MML
amr00930 Caprolactam degradation SBML MML
amr00940 (Undocumented) SBML MML
amr00941 (Undocumented) SBML MML
amr00960 (Undocumented) SBML MML
amr00970 Aminoacyl-tRNA biosynthesis SBML MML
amr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
amr00982 (Undocumented) SBML MML
amr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.