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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism apl: Actinobacillus pleuropneumoniae L20 (serotype 5b)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
apl00010 Glycolysis / Gluconeogenesis SBML MML
apl00020 Citrate cycle (TCA cycle) SBML MML
apl00030 Pentose phosphate pathway SBML MML
apl00040 Pentose and glucuronate interconversions SBML MML
apl00051 Fructose and mannose metabolism SBML MML
apl00052 Galactose metabolism SBML MML
apl00053 Ascorbate and aldarate metabolism SBML MML
apl00061 Fatty acid biosynthesis SBML MML
apl00062 Fatty acid elongation in mitochondria SBML MML
apl00071 Fatty acid metabolism SBML MML
apl00100 (Undocumented) SBML MML
apl00120 (Undocumented) SBML MML
apl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
apl00220 (Undocumented) SBML MML
apl00230 Purine metabolism SBML MML
apl00240 Pyrimidine metabolism SBML MML
apl00251 (Undocumented) SBML MML
apl00252 (Undocumented) SBML MML
apl00260 Glycine, serine and threonine metabolism SBML MML
apl00271 (Undocumented) SBML MML
apl00272 (Undocumented) SBML MML
apl00280 Valine, leucine and isoleucine degradation SBML MML
apl00281 Geraniol degradation SBML MML
apl00290 Valine, leucine and isoleucine biosynthesis SBML MML
apl00300 Lysine biosynthesis SBML MML
apl00310 Lysine degradation SBML MML
apl00330 Arginine and proline metabolism SBML MML
apl00340 Histidine metabolism SBML MML
apl00350 Tyrosine metabolism SBML MML
apl00360 Phenylalanine metabolism SBML MML
apl00362 (Undocumented) SBML MML
apl00380 Tryptophan metabolism SBML MML
apl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
apl00401 Novobiocin biosynthesis SBML MML
apl00410 beta-Alanine metabolism SBML MML
apl00430 Taurine and hypotaurine metabolism SBML MML
apl00440 Phosphonate and phosphinate metabolism SBML MML
apl00450 Selenoamino acid metabolism SBML MML
apl00460 (Undocumented) SBML MML
apl00471 D-Glutamine and D-glutamate metabolism SBML MML
apl00473 D-Alanine metabolism SBML MML
apl00480 Glutathione metabolism SBML MML
apl00500 Starch and sucrose metabolism SBML MML
apl00510 (Undocumented) SBML MML
apl00520 Amino sugar and nucleotide sugar metabolism SBML MML
apl00521 Streptomycin biosynthesis SBML MML
apl00530 (Undocumented) SBML MML
apl00540 Lipopolysaccharide biosynthesis SBML MML
apl00550 Peptidoglycan biosynthesis SBML MML
apl00561 Glycerolipid metabolism SBML MML
apl00562 Inositol phosphate metabolism SBML MML
apl00564 Glycerophospholipid metabolism SBML MML
apl00592 alpha-Linolenic acid metabolism SBML MML
apl00620 Pyruvate metabolism SBML MML
apl00624 1- and 2-Methylnaphthalene degradation SBML MML
apl00630 Glyoxylate and dicarboxylate metabolism SBML MML
apl00632 (Undocumented) SBML MML
apl00633 Trinitrotoluene degradation SBML MML
apl00640 Propanoate metabolism SBML MML
apl00641 3-Chloroacrylic acid degradation SBML MML
apl00642 Ethylbenzene degradation SBML MML
apl00650 Butanoate metabolism SBML MML
apl00660 C5-Branched dibasic acid metabolism SBML MML
apl00670 One carbon pool by folate SBML MML
apl00680 Methane metabolism SBML MML
apl00710 (Undocumented) SBML MML
apl00720 (Undocumented) SBML MML
apl00730 Thiamine metabolism SBML MML
apl00740 Riboflavin metabolism SBML MML
apl00750 Vitamin B6 metabolism SBML MML
apl00760 Nicotinate and nicotinamide metabolism SBML MML
apl00770 Pantothenate and CoA biosynthesis SBML MML
apl00780 Biotin metabolism SBML MML
apl00785 Lipoic acid metabolism SBML MML
apl00790 Folate biosynthesis SBML MML
apl00860 Porphyrin and chlorophyll metabolism SBML MML
apl00900 Terpenoid backbone biosynthesis SBML MML
apl00903 (Undocumented) SBML MML
apl00910 Nitrogen metabolism SBML MML
apl00920 Sulfur metabolism SBML MML
apl00930 Caprolactam degradation SBML MML
apl00940 (Undocumented) SBML MML
apl00950 (Undocumented) SBML MML
apl00960 (Undocumented) SBML MML
apl00970 Aminoacyl-tRNA biosynthesis SBML MML
apl00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
apl00982 (Undocumented) SBML MML
apl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.