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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ath: Arabidopsis thaliana (thale cress)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ath00010 Glycolysis / Gluconeogenesis SBML MML
ath00020 Citrate cycle (TCA cycle) SBML MML
ath00030 Pentose phosphate pathway SBML MML
ath00031 (Undocumented) SBML MML
ath00040 Pentose and glucuronate interconversions SBML MML
ath00051 Fructose and mannose metabolism SBML MML
ath00052 Galactose metabolism SBML MML
ath00053 Ascorbate and aldarate metabolism SBML MML
ath00061 Fatty acid biosynthesis SBML MML
ath00062 Fatty acid elongation in mitochondria SBML MML
ath00071 Fatty acid metabolism SBML MML
ath00072 Synthesis and degradation of ketone bodies SBML MML
ath00100 (Undocumented) SBML MML
ath00120 (Undocumented) SBML MML
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ath00140 (Undocumented) SBML MML
ath00150 Androgen and estrogen metabolism SBML MML
ath00220 (Undocumented) SBML MML
ath00230 Purine metabolism SBML MML
ath00232 Caffeine metabolism SBML MML
ath00240 Pyrimidine metabolism SBML MML
ath00251 (Undocumented) SBML MML
ath00252 (Undocumented) SBML MML
ath00260 Glycine, serine and threonine metabolism SBML MML
ath00271 (Undocumented) SBML MML
ath00272 (Undocumented) SBML MML
ath00280 Valine, leucine and isoleucine degradation SBML MML
ath00281 Geraniol degradation SBML MML
ath00290 Valine, leucine and isoleucine biosynthesis SBML MML
ath00300 Lysine biosynthesis SBML MML
ath00310 Lysine degradation SBML MML
ath00330 Arginine and proline metabolism SBML MML
ath00340 Histidine metabolism SBML MML
ath00350 Tyrosine metabolism SBML MML
ath00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
ath00360 Phenylalanine metabolism SBML MML
ath00361 gamma-Hexachlorocyclohexane degradation SBML MML
ath00362 (Undocumented) SBML MML
ath00364 Fluorobenzoate degradation SBML MML
ath00380 Tryptophan metabolism SBML MML
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ath00410 beta-Alanine metabolism SBML MML
ath00430 Taurine and hypotaurine metabolism SBML MML
ath00440 Phosphonate and phosphinate metabolism SBML MML
ath00450 Selenoamino acid metabolism SBML MML
ath00460 (Undocumented) SBML MML
ath00480 Glutathione metabolism SBML MML
ath00500 Starch and sucrose metabolism SBML MML
ath00510 (Undocumented) SBML MML
ath00520 Amino sugar and nucleotide sugar metabolism SBML MML
ath00521 Streptomycin biosynthesis SBML MML
ath00530 (Undocumented) SBML MML
ath00540 Lipopolysaccharide biosynthesis SBML MML
ath00550 Peptidoglycan biosynthesis SBML MML
ath00561 Glycerolipid metabolism SBML MML
ath00562 Inositol phosphate metabolism SBML MML
ath00564 Glycerophospholipid metabolism SBML MML
ath00565 Ether lipid metabolism SBML MML
ath00590 Arachidonic acid metabolism SBML MML
ath00592 alpha-Linolenic acid metabolism SBML MML
ath00600 Sphingolipid metabolism SBML MML
ath00620 Pyruvate metabolism SBML MML
ath00624 1- and 2-Methylnaphthalene degradation SBML MML
ath00626 Naphthalene and anthracene degradation SBML MML
ath00627 1,4-Dichlorobenzene degradation SBML MML
ath00628 Fluorene degradation SBML MML
ath00630 Glyoxylate and dicarboxylate metabolism SBML MML
ath00632 (Undocumented) SBML MML
ath00640 Propanoate metabolism SBML MML
ath00641 3-Chloroacrylic acid degradation SBML MML
ath00643 Styrene degradation SBML MML
ath00650 Butanoate metabolism SBML MML
ath00670 One carbon pool by folate SBML MML
ath00680 Methane metabolism SBML MML
ath00710 (Undocumented) SBML MML
ath00720 (Undocumented) SBML MML
ath00730 Thiamine metabolism SBML MML
ath00740 Riboflavin metabolism SBML MML
ath00750 Vitamin B6 metabolism SBML MML
ath00760 Nicotinate and nicotinamide metabolism SBML MML
ath00770 Pantothenate and CoA biosynthesis SBML MML
ath00780 Biotin metabolism SBML MML
ath00785 Lipoic acid metabolism SBML MML
ath00790 Folate biosynthesis SBML MML
ath00860 Porphyrin and chlorophyll metabolism SBML MML
ath00900 Terpenoid backbone biosynthesis SBML MML
ath00901 (Undocumented) SBML MML
ath00902 Monoterpenoid biosynthesis SBML MML
ath00903 (Undocumented) SBML MML
ath00904 (Undocumented) SBML MML
ath00905 Brassinosteroid biosynthesis SBML MML
ath00906 Carotenoid biosynthesis SBML MML
ath00908 (Undocumented) SBML MML
ath00910 Nitrogen metabolism SBML MML
ath00920 Sulfur metabolism SBML MML
ath00930 Caprolactam degradation SBML MML
ath00940 (Undocumented) SBML MML
ath00941 (Undocumented) SBML MML
ath00944 (Undocumented) SBML MML
ath00950 (Undocumented) SBML MML
ath00960 (Undocumented) SBML MML
ath00970 Aminoacyl-tRNA biosynthesis SBML MML
ath00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ath00982 (Undocumented) SBML MML
ath00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.