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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bad: Bifidobacterium adolescentis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bad00010 Glycolysis / Gluconeogenesis SBML MML
bad00020 Citrate cycle (TCA cycle) SBML MML
bad00030 Pentose phosphate pathway SBML MML
bad00040 Pentose and glucuronate interconversions SBML MML
bad00051 Fructose and mannose metabolism SBML MML
bad00052 Galactose metabolism SBML MML
bad00071 Fatty acid metabolism SBML MML
bad00100 (Undocumented) SBML MML
bad00120 (Undocumented) SBML MML
bad00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bad00220 (Undocumented) SBML MML
bad00230 Purine metabolism SBML MML
bad00240 Pyrimidine metabolism SBML MML
bad00251 (Undocumented) SBML MML
bad00252 (Undocumented) SBML MML
bad00260 Glycine, serine and threonine metabolism SBML MML
bad00271 (Undocumented) SBML MML
bad00272 (Undocumented) SBML MML
bad00280 Valine, leucine and isoleucine degradation SBML MML
bad00290 Valine, leucine and isoleucine biosynthesis SBML MML
bad00300 Lysine biosynthesis SBML MML
bad00330 Arginine and proline metabolism SBML MML
bad00340 Histidine metabolism SBML MML
bad00350 Tyrosine metabolism SBML MML
bad00360 Phenylalanine metabolism SBML MML
bad00380 Tryptophan metabolism SBML MML
bad00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bad00401 Novobiocin biosynthesis SBML MML
bad00430 Taurine and hypotaurine metabolism SBML MML
bad00450 Selenoamino acid metabolism SBML MML
bad00460 (Undocumented) SBML MML
bad00471 D-Glutamine and D-glutamate metabolism SBML MML
bad00473 D-Alanine metabolism SBML MML
bad00480 Glutathione metabolism SBML MML
bad00500 Starch and sucrose metabolism SBML MML
bad00520 Amino sugar and nucleotide sugar metabolism SBML MML
bad00521 Streptomycin biosynthesis SBML MML
bad00523 Polyketide sugar unit biosynthesis SBML MML
bad00530 (Undocumented) SBML MML
bad00550 Peptidoglycan biosynthesis SBML MML
bad00561 Glycerolipid metabolism SBML MML
bad00564 Glycerophospholipid metabolism SBML MML
bad00600 Sphingolipid metabolism SBML MML
bad00620 Pyruvate metabolism SBML MML
bad00624 1- and 2-Methylnaphthalene degradation SBML MML
bad00630 Glyoxylate and dicarboxylate metabolism SBML MML
bad00640 Propanoate metabolism SBML MML
bad00641 3-Chloroacrylic acid degradation SBML MML
bad00650 Butanoate metabolism SBML MML
bad00660 C5-Branched dibasic acid metabolism SBML MML
bad00670 One carbon pool by folate SBML MML
bad00680 Methane metabolism SBML MML
bad00710 (Undocumented) SBML MML
bad00720 (Undocumented) SBML MML
bad00730 Thiamine metabolism SBML MML
bad00740 Riboflavin metabolism SBML MML
bad00750 Vitamin B6 metabolism SBML MML
bad00760 Nicotinate and nicotinamide metabolism SBML MML
bad00770 Pantothenate and CoA biosynthesis SBML MML
bad00780 Biotin metabolism SBML MML
bad00785 Lipoic acid metabolism SBML MML
bad00790 Folate biosynthesis SBML MML
bad00860 Porphyrin and chlorophyll metabolism SBML MML
bad00900 Terpenoid backbone biosynthesis SBML MML
bad00910 Nitrogen metabolism SBML MML
bad00920 Sulfur metabolism SBML MML
bad00970 Aminoacyl-tRNA biosynthesis SBML MML
bad00982 (Undocumented) SBML MML
bad00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.