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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bas: Buchnera aphidicola Sg

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bas00010 Glycolysis / Gluconeogenesis SBML MML
bas00020 Citrate cycle (TCA cycle) SBML MML
bas00030 Pentose phosphate pathway SBML MML
bas00051 Fructose and mannose metabolism SBML MML
bas00061 Fatty acid biosynthesis SBML MML
bas00100 (Undocumented) SBML MML
bas00220 (Undocumented) SBML MML
bas00230 Purine metabolism SBML MML
bas00240 Pyrimidine metabolism SBML MML
bas00251 (Undocumented) SBML MML
bas00252 (Undocumented) SBML MML
bas00260 Glycine, serine and threonine metabolism SBML MML
bas00271 (Undocumented) SBML MML
bas00272 (Undocumented) SBML MML
bas00280 Valine, leucine and isoleucine degradation SBML MML
bas00290 Valine, leucine and isoleucine biosynthesis SBML MML
bas00300 Lysine biosynthesis SBML MML
bas00310 Lysine degradation SBML MML
bas00330 Arginine and proline metabolism SBML MML
bas00340 Histidine metabolism SBML MML
bas00380 Tryptophan metabolism SBML MML
bas00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bas00410 beta-Alanine metabolism SBML MML
bas00430 Taurine and hypotaurine metabolism SBML MML
bas00450 Selenoamino acid metabolism SBML MML
bas00471 D-Glutamine and D-glutamate metabolism SBML MML
bas00480 Glutathione metabolism SBML MML
bas00530 (Undocumented) SBML MML
bas00540 Lipopolysaccharide biosynthesis SBML MML
bas00550 Peptidoglycan biosynthesis SBML MML
bas00562 Inositol phosphate metabolism SBML MML
bas00620 Pyruvate metabolism SBML MML
bas00630 Glyoxylate and dicarboxylate metabolism SBML MML
bas00640 Propanoate metabolism SBML MML
bas00650 Butanoate metabolism SBML MML
bas00670 One carbon pool by folate SBML MML
bas00680 Methane metabolism SBML MML
bas00710 (Undocumented) SBML MML
bas00730 Thiamine metabolism SBML MML
bas00740 Riboflavin metabolism SBML MML
bas00750 Vitamin B6 metabolism SBML MML
bas00760 Nicotinate and nicotinamide metabolism SBML MML
bas00770 Pantothenate and CoA biosynthesis SBML MML
bas00780 Biotin metabolism SBML MML
bas00785 Lipoic acid metabolism SBML MML
bas00790 Folate biosynthesis SBML MML
bas00860 Porphyrin and chlorophyll metabolism SBML MML
bas00900 Terpenoid backbone biosynthesis SBML MML
bas00920 Sulfur metabolism SBML MML
bas00970 Aminoacyl-tRNA biosynthesis SBML MML
bas00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.