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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bay: Bacillus amyloliquefaciens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bay00010 Glycolysis / Gluconeogenesis SBML MML
bay00020 Citrate cycle (TCA cycle) SBML MML
bay00030 Pentose phosphate pathway SBML MML
bay00031 (Undocumented) SBML MML
bay00040 Pentose and glucuronate interconversions SBML MML
bay00051 Fructose and mannose metabolism SBML MML
bay00052 Galactose metabolism SBML MML
bay00053 Ascorbate and aldarate metabolism SBML MML
bay00061 Fatty acid biosynthesis SBML MML
bay00062 Fatty acid elongation in mitochondria SBML MML
bay00071 Fatty acid metabolism SBML MML
bay00072 Synthesis and degradation of ketone bodies SBML MML
bay00100 (Undocumented) SBML MML
bay00120 (Undocumented) SBML MML
bay00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bay00150 Androgen and estrogen metabolism SBML MML
bay00220 (Undocumented) SBML MML
bay00230 Purine metabolism SBML MML
bay00240 Pyrimidine metabolism SBML MML
bay00251 (Undocumented) SBML MML
bay00252 (Undocumented) SBML MML
bay00260 Glycine, serine and threonine metabolism SBML MML
bay00271 (Undocumented) SBML MML
bay00272 (Undocumented) SBML MML
bay00280 Valine, leucine and isoleucine degradation SBML MML
bay00281 Geraniol degradation SBML MML
bay00290 Valine, leucine and isoleucine biosynthesis SBML MML
bay00300 Lysine biosynthesis SBML MML
bay00310 Lysine degradation SBML MML
bay00311 Penicillin and cephalosporin biosynthesis SBML MML
bay00330 Arginine and proline metabolism SBML MML
bay00340 Histidine metabolism SBML MML
bay00350 Tyrosine metabolism SBML MML
bay00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
bay00360 Phenylalanine metabolism SBML MML
bay00361 gamma-Hexachlorocyclohexane degradation SBML MML
bay00362 (Undocumented) SBML MML
bay00363 Bisphenol A degradation SBML MML
bay00380 Tryptophan metabolism SBML MML
bay00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bay00401 Novobiocin biosynthesis SBML MML
bay00410 beta-Alanine metabolism SBML MML
bay00430 Taurine and hypotaurine metabolism SBML MML
bay00440 Phosphonate and phosphinate metabolism SBML MML
bay00450 Selenoamino acid metabolism SBML MML
bay00460 (Undocumented) SBML MML
bay00471 D-Glutamine and D-glutamate metabolism SBML MML
bay00472 D-Arginine and D-ornithine metabolism SBML MML
bay00473 D-Alanine metabolism SBML MML
bay00480 Glutathione metabolism SBML MML
bay00500 Starch and sucrose metabolism SBML MML
bay00510 (Undocumented) SBML MML
bay00520 Amino sugar and nucleotide sugar metabolism SBML MML
bay00521 Streptomycin biosynthesis SBML MML
bay00523 Polyketide sugar unit biosynthesis SBML MML
bay00530 (Undocumented) SBML MML
bay00550 Peptidoglycan biosynthesis SBML MML
bay00561 Glycerolipid metabolism SBML MML
bay00562 Inositol phosphate metabolism SBML MML
bay00564 Glycerophospholipid metabolism SBML MML
bay00590 Arachidonic acid metabolism SBML MML
bay00592 alpha-Linolenic acid metabolism SBML MML
bay00620 Pyruvate metabolism SBML MML
bay00622 Toluene and xylene degradation SBML MML
bay00624 1- and 2-Methylnaphthalene degradation SBML MML
bay00626 Naphthalene and anthracene degradation SBML MML
bay00627 1,4-Dichlorobenzene degradation SBML MML
bay00628 Fluorene degradation SBML MML
bay00630 Glyoxylate and dicarboxylate metabolism SBML MML
bay00631 1,2-Dichloroethane degradation SBML MML
bay00632 (Undocumented) SBML MML
bay00640 Propanoate metabolism SBML MML
bay00641 3-Chloroacrylic acid degradation SBML MML
bay00642 Ethylbenzene degradation SBML MML
bay00650 Butanoate metabolism SBML MML
bay00660 C5-Branched dibasic acid metabolism SBML MML
bay00670 One carbon pool by folate SBML MML
bay00680 Methane metabolism SBML MML
bay00710 (Undocumented) SBML MML
bay00720 (Undocumented) SBML MML
bay00730 Thiamine metabolism SBML MML
bay00740 Riboflavin metabolism SBML MML
bay00750 Vitamin B6 metabolism SBML MML
bay00760 Nicotinate and nicotinamide metabolism SBML MML
bay00770 Pantothenate and CoA biosynthesis SBML MML
bay00780 Biotin metabolism SBML MML
bay00785 Lipoic acid metabolism SBML MML
bay00790 Folate biosynthesis SBML MML
bay00860 Porphyrin and chlorophyll metabolism SBML MML
bay00900 Terpenoid backbone biosynthesis SBML MML
bay00903 (Undocumented) SBML MML
bay00910 Nitrogen metabolism SBML MML
bay00920 Sulfur metabolism SBML MML
bay00930 Caprolactam degradation SBML MML
bay00940 (Undocumented) SBML MML
bay00941 (Undocumented) SBML MML
bay00950 (Undocumented) SBML MML
bay00960 (Undocumented) SBML MML
bay00970 Aminoacyl-tRNA biosynthesis SBML MML
bay00982 (Undocumented) SBML MML
bay00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.