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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bbk: Bartonella bacilliformis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bbk00010 Glycolysis / Gluconeogenesis SBML MML
bbk00020 Citrate cycle (TCA cycle) SBML MML
bbk00030 Pentose phosphate pathway SBML MML
bbk00040 Pentose and glucuronate interconversions SBML MML
bbk00051 Fructose and mannose metabolism SBML MML
bbk00052 Galactose metabolism SBML MML
bbk00061 Fatty acid biosynthesis SBML MML
bbk00071 Fatty acid metabolism SBML MML
bbk00100 (Undocumented) SBML MML
bbk00120 (Undocumented) SBML MML
bbk00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bbk00220 (Undocumented) SBML MML
bbk00230 Purine metabolism SBML MML
bbk00240 Pyrimidine metabolism SBML MML
bbk00251 (Undocumented) SBML MML
bbk00252 (Undocumented) SBML MML
bbk00260 Glycine, serine and threonine metabolism SBML MML
bbk00271 (Undocumented) SBML MML
bbk00272 (Undocumented) SBML MML
bbk00280 Valine, leucine and isoleucine degradation SBML MML
bbk00290 Valine, leucine and isoleucine biosynthesis SBML MML
bbk00300 Lysine biosynthesis SBML MML
bbk00310 Lysine degradation SBML MML
bbk00330 Arginine and proline metabolism SBML MML
bbk00340 Histidine metabolism SBML MML
bbk00350 Tyrosine metabolism SBML MML
bbk00360 Phenylalanine metabolism SBML MML
bbk00380 Tryptophan metabolism SBML MML
bbk00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bbk00410 beta-Alanine metabolism SBML MML
bbk00450 Selenoamino acid metabolism SBML MML
bbk00460 (Undocumented) SBML MML
bbk00471 D-Glutamine and D-glutamate metabolism SBML MML
bbk00473 D-Alanine metabolism SBML MML
bbk00480 Glutathione metabolism SBML MML
bbk00500 Starch and sucrose metabolism SBML MML
bbk00521 Streptomycin biosynthesis SBML MML
bbk00530 (Undocumented) SBML MML
bbk00540 Lipopolysaccharide biosynthesis SBML MML
bbk00550 Peptidoglycan biosynthesis SBML MML
bbk00561 Glycerolipid metabolism SBML MML
bbk00562 Inositol phosphate metabolism SBML MML
bbk00564 Glycerophospholipid metabolism SBML MML
bbk00620 Pyruvate metabolism SBML MML
bbk00624 1- and 2-Methylnaphthalene degradation SBML MML
bbk00626 Naphthalene and anthracene degradation SBML MML
bbk00628 Fluorene degradation SBML MML
bbk00630 Glyoxylate and dicarboxylate metabolism SBML MML
bbk00632 (Undocumented) SBML MML
bbk00640 Propanoate metabolism SBML MML
bbk00641 3-Chloroacrylic acid degradation SBML MML
bbk00650 Butanoate metabolism SBML MML
bbk00670 One carbon pool by folate SBML MML
bbk00710 (Undocumented) SBML MML
bbk00720 (Undocumented) SBML MML
bbk00730 Thiamine metabolism SBML MML
bbk00740 Riboflavin metabolism SBML MML
bbk00750 Vitamin B6 metabolism SBML MML
bbk00760 Nicotinate and nicotinamide metabolism SBML MML
bbk00770 Pantothenate and CoA biosynthesis SBML MML
bbk00780 Biotin metabolism SBML MML
bbk00785 Lipoic acid metabolism SBML MML
bbk00790 Folate biosynthesis SBML MML
bbk00860 Porphyrin and chlorophyll metabolism SBML MML
bbk00900 Terpenoid backbone biosynthesis SBML MML
bbk00903 (Undocumented) SBML MML
bbk00910 Nitrogen metabolism SBML MML
bbk00940 (Undocumented) SBML MML
bbk00950 (Undocumented) SBML MML
bbk00960 (Undocumented) SBML MML
bbk00970 Aminoacyl-tRNA biosynthesis SBML MML
bbk00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bbk00982 (Undocumented) SBML MML
bbk00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.