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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bbr: Bordetella bronchiseptica

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bbr00010 Glycolysis / Gluconeogenesis SBML MML
bbr00020 Citrate cycle (TCA cycle) SBML MML
bbr00030 Pentose phosphate pathway SBML MML
bbr00031 (Undocumented) SBML MML
bbr00040 Pentose and glucuronate interconversions SBML MML
bbr00051 Fructose and mannose metabolism SBML MML
bbr00053 Ascorbate and aldarate metabolism SBML MML
bbr00061 Fatty acid biosynthesis SBML MML
bbr00062 Fatty acid elongation in mitochondria SBML MML
bbr00071 Fatty acid metabolism SBML MML
bbr00072 Synthesis and degradation of ketone bodies SBML MML
bbr00100 (Undocumented) SBML MML
bbr00120 (Undocumented) SBML MML
bbr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bbr00220 (Undocumented) SBML MML
bbr00230 Purine metabolism SBML MML
bbr00240 Pyrimidine metabolism SBML MML
bbr00251 (Undocumented) SBML MML
bbr00252 (Undocumented) SBML MML
bbr00260 Glycine, serine and threonine metabolism SBML MML
bbr00271 (Undocumented) SBML MML
bbr00272 (Undocumented) SBML MML
bbr00280 Valine, leucine and isoleucine degradation SBML MML
bbr00281 Geraniol degradation SBML MML
bbr00290 Valine, leucine and isoleucine biosynthesis SBML MML
bbr00300 Lysine biosynthesis SBML MML
bbr00310 Lysine degradation SBML MML
bbr00330 Arginine and proline metabolism SBML MML
bbr00340 Histidine metabolism SBML MML
bbr00350 Tyrosine metabolism SBML MML
bbr00360 Phenylalanine metabolism SBML MML
bbr00361 gamma-Hexachlorocyclohexane degradation SBML MML
bbr00362 (Undocumented) SBML MML
bbr00364 Fluorobenzoate degradation SBML MML
bbr00380 Tryptophan metabolism SBML MML
bbr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bbr00401 Novobiocin biosynthesis SBML MML
bbr00410 beta-Alanine metabolism SBML MML
bbr00430 Taurine and hypotaurine metabolism SBML MML
bbr00440 Phosphonate and phosphinate metabolism SBML MML
bbr00450 Selenoamino acid metabolism SBML MML
bbr00460 (Undocumented) SBML MML
bbr00471 D-Glutamine and D-glutamate metabolism SBML MML
bbr00472 D-Arginine and D-ornithine metabolism SBML MML
bbr00473 D-Alanine metabolism SBML MML
bbr00480 Glutathione metabolism SBML MML
bbr00500 Starch and sucrose metabolism SBML MML
bbr00520 Amino sugar and nucleotide sugar metabolism SBML MML
bbr00521 Streptomycin biosynthesis SBML MML
bbr00523 Polyketide sugar unit biosynthesis SBML MML
bbr00530 (Undocumented) SBML MML
bbr00540 Lipopolysaccharide biosynthesis SBML MML
bbr00550 Peptidoglycan biosynthesis SBML MML
bbr00561 Glycerolipid metabolism SBML MML
bbr00562 Inositol phosphate metabolism SBML MML
bbr00564 Glycerophospholipid metabolism SBML MML
bbr00565 Ether lipid metabolism SBML MML
bbr00590 Arachidonic acid metabolism SBML MML
bbr00592 alpha-Linolenic acid metabolism SBML MML
bbr00620 Pyruvate metabolism SBML MML
bbr00623 2,4-Dichlorobenzoate degradation SBML MML
bbr00624 1- and 2-Methylnaphthalene degradation SBML MML
bbr00626 Naphthalene and anthracene degradation SBML MML
bbr00627 1,4-Dichlorobenzene degradation SBML MML
bbr00628 Fluorene degradation SBML MML
bbr00630 Glyoxylate and dicarboxylate metabolism SBML MML
bbr00631 1,2-Dichloroethane degradation SBML MML
bbr00632 (Undocumented) SBML MML
bbr00633 Trinitrotoluene degradation SBML MML
bbr00640 Propanoate metabolism SBML MML
bbr00641 3-Chloroacrylic acid degradation SBML MML
bbr00643 Styrene degradation SBML MML
bbr00650 Butanoate metabolism SBML MML
bbr00660 C5-Branched dibasic acid metabolism SBML MML
bbr00670 One carbon pool by folate SBML MML
bbr00680 Methane metabolism SBML MML
bbr00710 (Undocumented) SBML MML
bbr00720 (Undocumented) SBML MML
bbr00730 Thiamine metabolism SBML MML
bbr00740 Riboflavin metabolism SBML MML
bbr00750 Vitamin B6 metabolism SBML MML
bbr00760 Nicotinate and nicotinamide metabolism SBML MML
bbr00770 Pantothenate and CoA biosynthesis SBML MML
bbr00780 Biotin metabolism SBML MML
bbr00785 Lipoic acid metabolism SBML MML
bbr00790 Folate biosynthesis SBML MML
bbr00860 Porphyrin and chlorophyll metabolism SBML MML
bbr00900 Terpenoid backbone biosynthesis SBML MML
bbr00903 (Undocumented) SBML MML
bbr00910 Nitrogen metabolism SBML MML
bbr00920 Sulfur metabolism SBML MML
bbr00930 Caprolactam degradation SBML MML
bbr00940 (Undocumented) SBML MML
bbr00950 (Undocumented) SBML MML
bbr00960 (Undocumented) SBML MML
bbr00970 Aminoacyl-tRNA biosynthesis SBML MML
bbr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bbr00982 (Undocumented) SBML MML
bbr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.