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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bca: Bacillus cereus ATCC 10987

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bca00010 Glycolysis / Gluconeogenesis SBML MML
bca00020 Citrate cycle (TCA cycle) SBML MML
bca00030 Pentose phosphate pathway SBML MML
bca00031 (Undocumented) SBML MML
bca00040 Pentose and glucuronate interconversions SBML MML
bca00051 Fructose and mannose metabolism SBML MML
bca00052 Galactose metabolism SBML MML
bca00053 Ascorbate and aldarate metabolism SBML MML
bca00061 Fatty acid biosynthesis SBML MML
bca00062 Fatty acid elongation in mitochondria SBML MML
bca00071 Fatty acid metabolism SBML MML
bca00072 Synthesis and degradation of ketone bodies SBML MML
bca00100 (Undocumented) SBML MML
bca00120 (Undocumented) SBML MML
bca00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bca00150 Androgen and estrogen metabolism SBML MML
bca00220 (Undocumented) SBML MML
bca00230 Purine metabolism SBML MML
bca00240 Pyrimidine metabolism SBML MML
bca00251 (Undocumented) SBML MML
bca00252 (Undocumented) SBML MML
bca00260 Glycine, serine and threonine metabolism SBML MML
bca00271 (Undocumented) SBML MML
bca00272 (Undocumented) SBML MML
bca00280 Valine, leucine and isoleucine degradation SBML MML
bca00281 Geraniol degradation SBML MML
bca00290 Valine, leucine and isoleucine biosynthesis SBML MML
bca00300 Lysine biosynthesis SBML MML
bca00310 Lysine degradation SBML MML
bca00311 Penicillin and cephalosporin biosynthesis SBML MML
bca00330 Arginine and proline metabolism SBML MML
bca00340 Histidine metabolism SBML MML
bca00350 Tyrosine metabolism SBML MML
bca00360 Phenylalanine metabolism SBML MML
bca00361 gamma-Hexachlorocyclohexane degradation SBML MML
bca00362 (Undocumented) SBML MML
bca00363 Bisphenol A degradation SBML MML
bca00380 Tryptophan metabolism SBML MML
bca00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bca00401 Novobiocin biosynthesis SBML MML
bca00410 beta-Alanine metabolism SBML MML
bca00430 Taurine and hypotaurine metabolism SBML MML
bca00440 Phosphonate and phosphinate metabolism SBML MML
bca00450 Selenoamino acid metabolism SBML MML
bca00460 (Undocumented) SBML MML
bca00471 D-Glutamine and D-glutamate metabolism SBML MML
bca00472 D-Arginine and D-ornithine metabolism SBML MML
bca00473 D-Alanine metabolism SBML MML
bca00480 Glutathione metabolism SBML MML
bca00500 Starch and sucrose metabolism SBML MML
bca00520 Amino sugar and nucleotide sugar metabolism SBML MML
bca00521 Streptomycin biosynthesis SBML MML
bca00523 Polyketide sugar unit biosynthesis SBML MML
bca00530 (Undocumented) SBML MML
bca00550 Peptidoglycan biosynthesis SBML MML
bca00561 Glycerolipid metabolism SBML MML
bca00562 Inositol phosphate metabolism SBML MML
bca00564 Glycerophospholipid metabolism SBML MML
bca00565 Ether lipid metabolism SBML MML
bca00590 Arachidonic acid metabolism SBML MML
bca00592 alpha-Linolenic acid metabolism SBML MML
bca00620 Pyruvate metabolism SBML MML
bca00621 (Undocumented) SBML MML
bca00622 Toluene and xylene degradation SBML MML
bca00624 1- and 2-Methylnaphthalene degradation SBML MML
bca00626 Naphthalene and anthracene degradation SBML MML
bca00627 1,4-Dichlorobenzene degradation SBML MML
bca00628 Fluorene degradation SBML MML
bca00629 Carbazole degradation SBML MML
bca00630 Glyoxylate and dicarboxylate metabolism SBML MML
bca00631 1,2-Dichloroethane degradation SBML MML
bca00632 (Undocumented) SBML MML
bca00640 Propanoate metabolism SBML MML
bca00641 3-Chloroacrylic acid degradation SBML MML
bca00642 Ethylbenzene degradation SBML MML
bca00643 Styrene degradation SBML MML
bca00650 Butanoate metabolism SBML MML
bca00660 C5-Branched dibasic acid metabolism SBML MML
bca00670 One carbon pool by folate SBML MML
bca00680 Methane metabolism SBML MML
bca00710 (Undocumented) SBML MML
bca00720 (Undocumented) SBML MML
bca00730 Thiamine metabolism SBML MML
bca00740 Riboflavin metabolism SBML MML
bca00750 Vitamin B6 metabolism SBML MML
bca00760 Nicotinate and nicotinamide metabolism SBML MML
bca00770 Pantothenate and CoA biosynthesis SBML MML
bca00780 Biotin metabolism SBML MML
bca00785 Lipoic acid metabolism SBML MML
bca00790 Folate biosynthesis SBML MML
bca00860 Porphyrin and chlorophyll metabolism SBML MML
bca00900 Terpenoid backbone biosynthesis SBML MML
bca00903 (Undocumented) SBML MML
bca00910 Nitrogen metabolism SBML MML
bca00920 Sulfur metabolism SBML MML
bca00930 Caprolactam degradation SBML MML
bca00950 (Undocumented) SBML MML
bca00960 (Undocumented) SBML MML
bca00970 Aminoacyl-tRNA biosynthesis SBML MML
bca00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bca00982 (Undocumented) SBML MML
bca00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.