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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bcl: Bacillus clausii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bcl00010 Glycolysis / Gluconeogenesis SBML MML
bcl00020 Citrate cycle (TCA cycle) SBML MML
bcl00030 Pentose phosphate pathway SBML MML
bcl00031 (Undocumented) SBML MML
bcl00040 Pentose and glucuronate interconversions SBML MML
bcl00051 Fructose and mannose metabolism SBML MML
bcl00052 Galactose metabolism SBML MML
bcl00053 Ascorbate and aldarate metabolism SBML MML
bcl00061 Fatty acid biosynthesis SBML MML
bcl00062 Fatty acid elongation in mitochondria SBML MML
bcl00071 Fatty acid metabolism SBML MML
bcl00072 Synthesis and degradation of ketone bodies SBML MML
bcl00100 (Undocumented) SBML MML
bcl00120 (Undocumented) SBML MML
bcl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bcl00150 Androgen and estrogen metabolism SBML MML
bcl00220 (Undocumented) SBML MML
bcl00230 Purine metabolism SBML MML
bcl00240 Pyrimidine metabolism SBML MML
bcl00251 (Undocumented) SBML MML
bcl00252 (Undocumented) SBML MML
bcl00260 Glycine, serine and threonine metabolism SBML MML
bcl00271 (Undocumented) SBML MML
bcl00272 (Undocumented) SBML MML
bcl00280 Valine, leucine and isoleucine degradation SBML MML
bcl00281 Geraniol degradation SBML MML
bcl00290 Valine, leucine and isoleucine biosynthesis SBML MML
bcl00300 Lysine biosynthesis SBML MML
bcl00310 Lysine degradation SBML MML
bcl00311 Penicillin and cephalosporin biosynthesis SBML MML
bcl00330 Arginine and proline metabolism SBML MML
bcl00340 Histidine metabolism SBML MML
bcl00350 Tyrosine metabolism SBML MML
bcl00360 Phenylalanine metabolism SBML MML
bcl00361 gamma-Hexachlorocyclohexane degradation SBML MML
bcl00362 (Undocumented) SBML MML
bcl00363 Bisphenol A degradation SBML MML
bcl00380 Tryptophan metabolism SBML MML
bcl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bcl00401 Novobiocin biosynthesis SBML MML
bcl00410 beta-Alanine metabolism SBML MML
bcl00430 Taurine and hypotaurine metabolism SBML MML
bcl00440 Phosphonate and phosphinate metabolism SBML MML
bcl00450 Selenoamino acid metabolism SBML MML
bcl00460 (Undocumented) SBML MML
bcl00471 D-Glutamine and D-glutamate metabolism SBML MML
bcl00472 D-Arginine and D-ornithine metabolism SBML MML
bcl00473 D-Alanine metabolism SBML MML
bcl00480 Glutathione metabolism SBML MML
bcl00500 Starch and sucrose metabolism SBML MML
bcl00520 Amino sugar and nucleotide sugar metabolism SBML MML
bcl00521 Streptomycin biosynthesis SBML MML
bcl00523 Polyketide sugar unit biosynthesis SBML MML
bcl00530 (Undocumented) SBML MML
bcl00550 Peptidoglycan biosynthesis SBML MML
bcl00561 Glycerolipid metabolism SBML MML
bcl00562 Inositol phosphate metabolism SBML MML
bcl00564 Glycerophospholipid metabolism SBML MML
bcl00590 Arachidonic acid metabolism SBML MML
bcl00600 Sphingolipid metabolism SBML MML
bcl00620 Pyruvate metabolism SBML MML
bcl00622 Toluene and xylene degradation SBML MML
bcl00624 1- and 2-Methylnaphthalene degradation SBML MML
bcl00626 Naphthalene and anthracene degradation SBML MML
bcl00627 1,4-Dichlorobenzene degradation SBML MML
bcl00628 Fluorene degradation SBML MML
bcl00630 Glyoxylate and dicarboxylate metabolism SBML MML
bcl00632 (Undocumented) SBML MML
bcl00640 Propanoate metabolism SBML MML
bcl00641 3-Chloroacrylic acid degradation SBML MML
bcl00643 Styrene degradation SBML MML
bcl00650 Butanoate metabolism SBML MML
bcl00660 C5-Branched dibasic acid metabolism SBML MML
bcl00670 One carbon pool by folate SBML MML
bcl00680 Methane metabolism SBML MML
bcl00710 (Undocumented) SBML MML
bcl00720 (Undocumented) SBML MML
bcl00730 Thiamine metabolism SBML MML
bcl00740 Riboflavin metabolism SBML MML
bcl00750 Vitamin B6 metabolism SBML MML
bcl00760 Nicotinate and nicotinamide metabolism SBML MML
bcl00770 Pantothenate and CoA biosynthesis SBML MML
bcl00780 Biotin metabolism SBML MML
bcl00785 Lipoic acid metabolism SBML MML
bcl00790 Folate biosynthesis SBML MML
bcl00860 Porphyrin and chlorophyll metabolism SBML MML
bcl00900 Terpenoid backbone biosynthesis SBML MML
bcl00903 (Undocumented) SBML MML
bcl00910 Nitrogen metabolism SBML MML
bcl00920 Sulfur metabolism SBML MML
bcl00930 Caprolactam degradation SBML MML
bcl00940 (Undocumented) SBML MML
bcl00941 (Undocumented) SBML MML
bcl00950 (Undocumented) SBML MML
bcl00960 (Undocumented) SBML MML
bcl00970 Aminoacyl-tRNA biosynthesis SBML MML
bcl00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bcl00982 (Undocumented) SBML MML
bcl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.