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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bcm: Burkholderia cenocepacia MC0-3

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bcm00010 Glycolysis / Gluconeogenesis SBML MML
bcm00020 Citrate cycle (TCA cycle) SBML MML
bcm00030 Pentose phosphate pathway SBML MML
bcm00031 (Undocumented) SBML MML
bcm00040 Pentose and glucuronate interconversions SBML MML
bcm00051 Fructose and mannose metabolism SBML MML
bcm00052 Galactose metabolism SBML MML
bcm00053 Ascorbate and aldarate metabolism SBML MML
bcm00061 Fatty acid biosynthesis SBML MML
bcm00062 Fatty acid elongation in mitochondria SBML MML
bcm00071 Fatty acid metabolism SBML MML
bcm00072 Synthesis and degradation of ketone bodies SBML MML
bcm00100 (Undocumented) SBML MML
bcm00120 (Undocumented) SBML MML
bcm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bcm00150 Androgen and estrogen metabolism SBML MML
bcm00220 (Undocumented) SBML MML
bcm00230 Purine metabolism SBML MML
bcm00240 Pyrimidine metabolism SBML MML
bcm00251 (Undocumented) SBML MML
bcm00252 (Undocumented) SBML MML
bcm00260 Glycine, serine and threonine metabolism SBML MML
bcm00271 (Undocumented) SBML MML
bcm00272 (Undocumented) SBML MML
bcm00280 Valine, leucine and isoleucine degradation SBML MML
bcm00281 Geraniol degradation SBML MML
bcm00290 Valine, leucine and isoleucine biosynthesis SBML MML
bcm00300 Lysine biosynthesis SBML MML
bcm00310 Lysine degradation SBML MML
bcm00330 Arginine and proline metabolism SBML MML
bcm00340 Histidine metabolism SBML MML
bcm00350 Tyrosine metabolism SBML MML
bcm00360 Phenylalanine metabolism SBML MML
bcm00361 gamma-Hexachlorocyclohexane degradation SBML MML
bcm00362 (Undocumented) SBML MML
bcm00363 Bisphenol A degradation SBML MML
bcm00364 Fluorobenzoate degradation SBML MML
bcm00380 Tryptophan metabolism SBML MML
bcm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bcm00401 Novobiocin biosynthesis SBML MML
bcm00410 beta-Alanine metabolism SBML MML
bcm00430 Taurine and hypotaurine metabolism SBML MML
bcm00440 Phosphonate and phosphinate metabolism SBML MML
bcm00450 Selenoamino acid metabolism SBML MML
bcm00460 (Undocumented) SBML MML
bcm00471 D-Glutamine and D-glutamate metabolism SBML MML
bcm00472 D-Arginine and D-ornithine metabolism SBML MML
bcm00473 D-Alanine metabolism SBML MML
bcm00480 Glutathione metabolism SBML MML
bcm00500 Starch and sucrose metabolism SBML MML
bcm00520 Amino sugar and nucleotide sugar metabolism SBML MML
bcm00521 Streptomycin biosynthesis SBML MML
bcm00523 Polyketide sugar unit biosynthesis SBML MML
bcm00530 (Undocumented) SBML MML
bcm00540 Lipopolysaccharide biosynthesis SBML MML
bcm00550 Peptidoglycan biosynthesis SBML MML
bcm00561 Glycerolipid metabolism SBML MML
bcm00562 Inositol phosphate metabolism SBML MML
bcm00564 Glycerophospholipid metabolism SBML MML
bcm00565 Ether lipid metabolism SBML MML
bcm00590 Arachidonic acid metabolism SBML MML
bcm00592 alpha-Linolenic acid metabolism SBML MML
bcm00600 Sphingolipid metabolism SBML MML
bcm00620 Pyruvate metabolism SBML MML
bcm00622 Toluene and xylene degradation SBML MML
bcm00623 2,4-Dichlorobenzoate degradation SBML MML
bcm00624 1- and 2-Methylnaphthalene degradation SBML MML
bcm00626 Naphthalene and anthracene degradation SBML MML
bcm00627 1,4-Dichlorobenzene degradation SBML MML
bcm00628 Fluorene degradation SBML MML
bcm00630 Glyoxylate and dicarboxylate metabolism SBML MML
bcm00631 1,2-Dichloroethane degradation SBML MML
bcm00632 (Undocumented) SBML MML
bcm00633 Trinitrotoluene degradation SBML MML
bcm00640 Propanoate metabolism SBML MML
bcm00641 3-Chloroacrylic acid degradation SBML MML
bcm00642 Ethylbenzene degradation SBML MML
bcm00643 Styrene degradation SBML MML
bcm00650 Butanoate metabolism SBML MML
bcm00660 C5-Branched dibasic acid metabolism SBML MML
bcm00670 One carbon pool by folate SBML MML
bcm00680 Methane metabolism SBML MML
bcm00710 (Undocumented) SBML MML
bcm00720 (Undocumented) SBML MML
bcm00730 Thiamine metabolism SBML MML
bcm00740 Riboflavin metabolism SBML MML
bcm00750 Vitamin B6 metabolism SBML MML
bcm00760 Nicotinate and nicotinamide metabolism SBML MML
bcm00770 Pantothenate and CoA biosynthesis SBML MML
bcm00780 Biotin metabolism SBML MML
bcm00790 Folate biosynthesis SBML MML
bcm00791 Atrazine degradation SBML MML
bcm00860 Porphyrin and chlorophyll metabolism SBML MML
bcm00900 Terpenoid backbone biosynthesis SBML MML
bcm00903 (Undocumented) SBML MML
bcm00910 Nitrogen metabolism SBML MML
bcm00920 Sulfur metabolism SBML MML
bcm00930 Caprolactam degradation SBML MML
bcm00940 (Undocumented) SBML MML
bcm00941 (Undocumented) SBML MML
bcm00950 (Undocumented) SBML MML
bcm00960 (Undocumented) SBML MML
bcm00970 Aminoacyl-tRNA biosynthesis SBML MML
bcm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bcm00982 (Undocumented) SBML MML
bcm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.