This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bcy: Bacillus cytotoxis NVH 391-98

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bcy00010 Glycolysis / Gluconeogenesis SBML MML
bcy00020 Citrate cycle (TCA cycle) SBML MML
bcy00030 Pentose phosphate pathway SBML MML
bcy00031 (Undocumented) SBML MML
bcy00040 Pentose and glucuronate interconversions SBML MML
bcy00051 Fructose and mannose metabolism SBML MML
bcy00052 Galactose metabolism SBML MML
bcy00053 Ascorbate and aldarate metabolism SBML MML
bcy00061 Fatty acid biosynthesis SBML MML
bcy00062 Fatty acid elongation in mitochondria SBML MML
bcy00071 Fatty acid metabolism SBML MML
bcy00072 Synthesis and degradation of ketone bodies SBML MML
bcy00100 (Undocumented) SBML MML
bcy00120 (Undocumented) SBML MML
bcy00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bcy00150 Androgen and estrogen metabolism SBML MML
bcy00220 (Undocumented) SBML MML
bcy00230 Purine metabolism SBML MML
bcy00240 Pyrimidine metabolism SBML MML
bcy00251 (Undocumented) SBML MML
bcy00252 (Undocumented) SBML MML
bcy00260 Glycine, serine and threonine metabolism SBML MML
bcy00271 (Undocumented) SBML MML
bcy00272 (Undocumented) SBML MML
bcy00280 Valine, leucine and isoleucine degradation SBML MML
bcy00281 Geraniol degradation SBML MML
bcy00290 Valine, leucine and isoleucine biosynthesis SBML MML
bcy00300 Lysine biosynthesis SBML MML
bcy00310 Lysine degradation SBML MML
bcy00330 Arginine and proline metabolism SBML MML
bcy00340 Histidine metabolism SBML MML
bcy00350 Tyrosine metabolism SBML MML
bcy00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
bcy00360 Phenylalanine metabolism SBML MML
bcy00361 gamma-Hexachlorocyclohexane degradation SBML MML
bcy00362 (Undocumented) SBML MML
bcy00380 Tryptophan metabolism SBML MML
bcy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bcy00401 Novobiocin biosynthesis SBML MML
bcy00410 beta-Alanine metabolism SBML MML
bcy00430 Taurine and hypotaurine metabolism SBML MML
bcy00440 Phosphonate and phosphinate metabolism SBML MML
bcy00450 Selenoamino acid metabolism SBML MML
bcy00460 (Undocumented) SBML MML
bcy00471 D-Glutamine and D-glutamate metabolism SBML MML
bcy00472 D-Arginine and D-ornithine metabolism SBML MML
bcy00473 D-Alanine metabolism SBML MML
bcy00480 Glutathione metabolism SBML MML
bcy00500 Starch and sucrose metabolism SBML MML
bcy00510 (Undocumented) SBML MML
bcy00520 Amino sugar and nucleotide sugar metabolism SBML MML
bcy00521 Streptomycin biosynthesis SBML MML
bcy00523 Polyketide sugar unit biosynthesis SBML MML
bcy00530 (Undocumented) SBML MML
bcy00550 Peptidoglycan biosynthesis SBML MML
bcy00561 Glycerolipid metabolism SBML MML
bcy00562 Inositol phosphate metabolism SBML MML
bcy00564 Glycerophospholipid metabolism SBML MML
bcy00565 Ether lipid metabolism SBML MML
bcy00590 Arachidonic acid metabolism SBML MML
bcy00592 alpha-Linolenic acid metabolism SBML MML
bcy00620 Pyruvate metabolism SBML MML
bcy00624 1- and 2-Methylnaphthalene degradation SBML MML
bcy00626 Naphthalene and anthracene degradation SBML MML
bcy00630 Glyoxylate and dicarboxylate metabolism SBML MML
bcy00631 1,2-Dichloroethane degradation SBML MML
bcy00632 (Undocumented) SBML MML
bcy00640 Propanoate metabolism SBML MML
bcy00641 3-Chloroacrylic acid degradation SBML MML
bcy00642 Ethylbenzene degradation SBML MML
bcy00643 Styrene degradation SBML MML
bcy00650 Butanoate metabolism SBML MML
bcy00660 C5-Branched dibasic acid metabolism SBML MML
bcy00670 One carbon pool by folate SBML MML
bcy00680 Methane metabolism SBML MML
bcy00710 (Undocumented) SBML MML
bcy00720 (Undocumented) SBML MML
bcy00730 Thiamine metabolism SBML MML
bcy00740 Riboflavin metabolism SBML MML
bcy00750 Vitamin B6 metabolism SBML MML
bcy00760 Nicotinate and nicotinamide metabolism SBML MML
bcy00770 Pantothenate and CoA biosynthesis SBML MML
bcy00780 Biotin metabolism SBML MML
bcy00785 Lipoic acid metabolism SBML MML
bcy00790 Folate biosynthesis SBML MML
bcy00860 Porphyrin and chlorophyll metabolism SBML MML
bcy00900 Terpenoid backbone biosynthesis SBML MML
bcy00903 (Undocumented) SBML MML
bcy00910 Nitrogen metabolism SBML MML
bcy00920 Sulfur metabolism SBML MML
bcy00930 Caprolactam degradation SBML MML
bcy00940 (Undocumented) SBML MML
bcy00960 (Undocumented) SBML MML
bcy00970 Aminoacyl-tRNA biosynthesis SBML MML
bcy00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bcy00982 (Undocumented) SBML MML
bcy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.