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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bfr: Bacteroides fragilis YCH46

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bfr00010 Glycolysis / Gluconeogenesis SBML MML
bfr00020 Citrate cycle (TCA cycle) SBML MML
bfr00030 Pentose phosphate pathway SBML MML
bfr00040 Pentose and glucuronate interconversions SBML MML
bfr00051 Fructose and mannose metabolism SBML MML
bfr00052 Galactose metabolism SBML MML
bfr00061 Fatty acid biosynthesis SBML MML
bfr00071 Fatty acid metabolism SBML MML
bfr00100 (Undocumented) SBML MML
bfr00120 (Undocumented) SBML MML
bfr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bfr00150 Androgen and estrogen metabolism SBML MML
bfr00220 (Undocumented) SBML MML
bfr00230 Purine metabolism SBML MML
bfr00240 Pyrimidine metabolism SBML MML
bfr00251 (Undocumented) SBML MML
bfr00252 (Undocumented) SBML MML
bfr00260 Glycine, serine and threonine metabolism SBML MML
bfr00271 (Undocumented) SBML MML
bfr00272 (Undocumented) SBML MML
bfr00280 Valine, leucine and isoleucine degradation SBML MML
bfr00281 Geraniol degradation SBML MML
bfr00290 Valine, leucine and isoleucine biosynthesis SBML MML
bfr00300 Lysine biosynthesis SBML MML
bfr00330 Arginine and proline metabolism SBML MML
bfr00340 Histidine metabolism SBML MML
bfr00350 Tyrosine metabolism SBML MML
bfr00360 Phenylalanine metabolism SBML MML
bfr00361 gamma-Hexachlorocyclohexane degradation SBML MML
bfr00380 Tryptophan metabolism SBML MML
bfr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bfr00401 Novobiocin biosynthesis SBML MML
bfr00410 beta-Alanine metabolism SBML MML
bfr00430 Taurine and hypotaurine metabolism SBML MML
bfr00440 Phosphonate and phosphinate metabolism SBML MML
bfr00450 Selenoamino acid metabolism SBML MML
bfr00460 (Undocumented) SBML MML
bfr00471 D-Glutamine and D-glutamate metabolism SBML MML
bfr00473 D-Alanine metabolism SBML MML
bfr00480 Glutathione metabolism SBML MML
bfr00500 Starch and sucrose metabolism SBML MML
bfr00520 Amino sugar and nucleotide sugar metabolism SBML MML
bfr00521 Streptomycin biosynthesis SBML MML
bfr00523 Polyketide sugar unit biosynthesis SBML MML
bfr00530 (Undocumented) SBML MML
bfr00540 Lipopolysaccharide biosynthesis SBML MML
bfr00550 Peptidoglycan biosynthesis SBML MML
bfr00561 Glycerolipid metabolism SBML MML
bfr00562 Inositol phosphate metabolism SBML MML
bfr00564 Glycerophospholipid metabolism SBML MML
bfr00590 Arachidonic acid metabolism SBML MML
bfr00600 Sphingolipid metabolism SBML MML
bfr00620 Pyruvate metabolism SBML MML
bfr00624 1- and 2-Methylnaphthalene degradation SBML MML
bfr00626 Naphthalene and anthracene degradation SBML MML
bfr00630 Glyoxylate and dicarboxylate metabolism SBML MML
bfr00632 (Undocumented) SBML MML
bfr00640 Propanoate metabolism SBML MML
bfr00641 3-Chloroacrylic acid degradation SBML MML
bfr00650 Butanoate metabolism SBML MML
bfr00660 C5-Branched dibasic acid metabolism SBML MML
bfr00670 One carbon pool by folate SBML MML
bfr00680 Methane metabolism SBML MML
bfr00710 (Undocumented) SBML MML
bfr00720 (Undocumented) SBML MML
bfr00730 Thiamine metabolism SBML MML
bfr00740 Riboflavin metabolism SBML MML
bfr00750 Vitamin B6 metabolism SBML MML
bfr00760 Nicotinate and nicotinamide metabolism SBML MML
bfr00770 Pantothenate and CoA biosynthesis SBML MML
bfr00780 Biotin metabolism SBML MML
bfr00785 Lipoic acid metabolism SBML MML
bfr00790 Folate biosynthesis SBML MML
bfr00860 Porphyrin and chlorophyll metabolism SBML MML
bfr00900 Terpenoid backbone biosynthesis SBML MML
bfr00903 (Undocumented) SBML MML
bfr00910 Nitrogen metabolism SBML MML
bfr00920 Sulfur metabolism SBML MML
bfr00940 (Undocumented) SBML MML
bfr00950 (Undocumented) SBML MML
bfr00960 (Undocumented) SBML MML
bfr00970 Aminoacyl-tRNA biosynthesis SBML MML
bfr00982 (Undocumented) SBML MML
bfr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.