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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism blo: Bifidobacterium longum NCC2705

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
blo00010 Glycolysis / Gluconeogenesis SBML MML
blo00020 Citrate cycle (TCA cycle) SBML MML
blo00030 Pentose phosphate pathway SBML MML
blo00040 Pentose and glucuronate interconversions SBML MML
blo00051 Fructose and mannose metabolism SBML MML
blo00052 Galactose metabolism SBML MML
blo00061 Fatty acid biosynthesis SBML MML
blo00071 Fatty acid metabolism SBML MML
blo00100 (Undocumented) SBML MML
blo00120 (Undocumented) SBML MML
blo00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
blo00220 (Undocumented) SBML MML
blo00230 Purine metabolism SBML MML
blo00240 Pyrimidine metabolism SBML MML
blo00251 (Undocumented) SBML MML
blo00252 (Undocumented) SBML MML
blo00260 Glycine, serine and threonine metabolism SBML MML
blo00271 (Undocumented) SBML MML
blo00272 (Undocumented) SBML MML
blo00280 Valine, leucine and isoleucine degradation SBML MML
blo00290 Valine, leucine and isoleucine biosynthesis SBML MML
blo00300 Lysine biosynthesis SBML MML
blo00330 Arginine and proline metabolism SBML MML
blo00340 Histidine metabolism SBML MML
blo00350 Tyrosine metabolism SBML MML
blo00360 Phenylalanine metabolism SBML MML
blo00380 Tryptophan metabolism SBML MML
blo00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
blo00401 Novobiocin biosynthesis SBML MML
blo00430 Taurine and hypotaurine metabolism SBML MML
blo00450 Selenoamino acid metabolism SBML MML
blo00460 (Undocumented) SBML MML
blo00471 D-Glutamine and D-glutamate metabolism SBML MML
blo00473 D-Alanine metabolism SBML MML
blo00480 Glutathione metabolism SBML MML
blo00500 Starch and sucrose metabolism SBML MML
blo00520 Amino sugar and nucleotide sugar metabolism SBML MML
blo00521 Streptomycin biosynthesis SBML MML
blo00523 Polyketide sugar unit biosynthesis SBML MML
blo00530 (Undocumented) SBML MML
blo00550 Peptidoglycan biosynthesis SBML MML
blo00561 Glycerolipid metabolism SBML MML
blo00564 Glycerophospholipid metabolism SBML MML
blo00600 Sphingolipid metabolism SBML MML
blo00620 Pyruvate metabolism SBML MML
blo00624 1- and 2-Methylnaphthalene degradation SBML MML
blo00630 Glyoxylate and dicarboxylate metabolism SBML MML
blo00632 (Undocumented) SBML MML
blo00640 Propanoate metabolism SBML MML
blo00641 3-Chloroacrylic acid degradation SBML MML
blo00650 Butanoate metabolism SBML MML
blo00660 C5-Branched dibasic acid metabolism SBML MML
blo00670 One carbon pool by folate SBML MML
blo00680 Methane metabolism SBML MML
blo00710 (Undocumented) SBML MML
blo00720 (Undocumented) SBML MML
blo00730 Thiamine metabolism SBML MML
blo00740 Riboflavin metabolism SBML MML
blo00750 Vitamin B6 metabolism SBML MML
blo00760 Nicotinate and nicotinamide metabolism SBML MML
blo00770 Pantothenate and CoA biosynthesis SBML MML
blo00780 Biotin metabolism SBML MML
blo00785 Lipoic acid metabolism SBML MML
blo00790 Folate biosynthesis SBML MML
blo00860 Porphyrin and chlorophyll metabolism SBML MML
blo00900 Terpenoid backbone biosynthesis SBML MML
blo00903 (Undocumented) SBML MML
blo00910 Nitrogen metabolism SBML MML
blo00920 Sulfur metabolism SBML MML
blo00960 (Undocumented) SBML MML
blo00970 Aminoacyl-tRNA biosynthesis SBML MML
blo00982 (Undocumented) SBML MML
blo00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.