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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bma: Burkholderia mallei ATCC 23344

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bma00010 Glycolysis / Gluconeogenesis SBML MML
bma00020 Citrate cycle (TCA cycle) SBML MML
bma00030 Pentose phosphate pathway SBML MML
bma00031 (Undocumented) SBML MML
bma00040 Pentose and glucuronate interconversions SBML MML
bma00051 Fructose and mannose metabolism SBML MML
bma00052 Galactose metabolism SBML MML
bma00053 Ascorbate and aldarate metabolism SBML MML
bma00061 Fatty acid biosynthesis SBML MML
bma00062 Fatty acid elongation in mitochondria SBML MML
bma00071 Fatty acid metabolism SBML MML
bma00072 Synthesis and degradation of ketone bodies SBML MML
bma00100 (Undocumented) SBML MML
bma00120 (Undocumented) SBML MML
bma00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bma00150 Androgen and estrogen metabolism SBML MML
bma00220 (Undocumented) SBML MML
bma00230 Purine metabolism SBML MML
bma00240 Pyrimidine metabolism SBML MML
bma00251 (Undocumented) SBML MML
bma00252 (Undocumented) SBML MML
bma00260 Glycine, serine and threonine metabolism SBML MML
bma00271 (Undocumented) SBML MML
bma00272 (Undocumented) SBML MML
bma00280 Valine, leucine and isoleucine degradation SBML MML
bma00281 Geraniol degradation SBML MML
bma00290 Valine, leucine and isoleucine biosynthesis SBML MML
bma00300 Lysine biosynthesis SBML MML
bma00310 Lysine degradation SBML MML
bma00311 Penicillin and cephalosporin biosynthesis SBML MML
bma00330 Arginine and proline metabolism SBML MML
bma00340 Histidine metabolism SBML MML
bma00350 Tyrosine metabolism SBML MML
bma00360 Phenylalanine metabolism SBML MML
bma00361 gamma-Hexachlorocyclohexane degradation SBML MML
bma00362 (Undocumented) SBML MML
bma00363 Bisphenol A degradation SBML MML
bma00364 Fluorobenzoate degradation SBML MML
bma00380 Tryptophan metabolism SBML MML
bma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bma00401 Novobiocin biosynthesis SBML MML
bma00410 beta-Alanine metabolism SBML MML
bma00430 Taurine and hypotaurine metabolism SBML MML
bma00440 Phosphonate and phosphinate metabolism SBML MML
bma00450 Selenoamino acid metabolism SBML MML
bma00460 (Undocumented) SBML MML
bma00471 D-Glutamine and D-glutamate metabolism SBML MML
bma00472 D-Arginine and D-ornithine metabolism SBML MML
bma00473 D-Alanine metabolism SBML MML
bma00480 Glutathione metabolism SBML MML
bma00500 Starch and sucrose metabolism SBML MML
bma00520 Amino sugar and nucleotide sugar metabolism SBML MML
bma00521 Streptomycin biosynthesis SBML MML
bma00523 Polyketide sugar unit biosynthesis SBML MML
bma00530 (Undocumented) SBML MML
bma00540 Lipopolysaccharide biosynthesis SBML MML
bma00550 Peptidoglycan biosynthesis SBML MML
bma00561 Glycerolipid metabolism SBML MML
bma00562 Inositol phosphate metabolism SBML MML
bma00564 Glycerophospholipid metabolism SBML MML
bma00565 Ether lipid metabolism SBML MML
bma00590 Arachidonic acid metabolism SBML MML
bma00592 alpha-Linolenic acid metabolism SBML MML
bma00620 Pyruvate metabolism SBML MML
bma00622 Toluene and xylene degradation SBML MML
bma00623 2,4-Dichlorobenzoate degradation SBML MML
bma00624 1- and 2-Methylnaphthalene degradation SBML MML
bma00626 Naphthalene and anthracene degradation SBML MML
bma00627 1,4-Dichlorobenzene degradation SBML MML
bma00628 Fluorene degradation SBML MML
bma00630 Glyoxylate and dicarboxylate metabolism SBML MML
bma00631 1,2-Dichloroethane degradation SBML MML
bma00632 (Undocumented) SBML MML
bma00640 Propanoate metabolism SBML MML
bma00641 3-Chloroacrylic acid degradation SBML MML
bma00642 Ethylbenzene degradation SBML MML
bma00643 Styrene degradation SBML MML
bma00650 Butanoate metabolism SBML MML
bma00660 C5-Branched dibasic acid metabolism SBML MML
bma00670 One carbon pool by folate SBML MML
bma00680 Methane metabolism SBML MML
bma00710 (Undocumented) SBML MML
bma00720 (Undocumented) SBML MML
bma00730 Thiamine metabolism SBML MML
bma00740 Riboflavin metabolism SBML MML
bma00750 Vitamin B6 metabolism SBML MML
bma00760 Nicotinate and nicotinamide metabolism SBML MML
bma00770 Pantothenate and CoA biosynthesis SBML MML
bma00780 Biotin metabolism SBML MML
bma00785 Lipoic acid metabolism SBML MML
bma00790 Folate biosynthesis SBML MML
bma00791 Atrazine degradation SBML MML
bma00860 Porphyrin and chlorophyll metabolism SBML MML
bma00900 Terpenoid backbone biosynthesis SBML MML
bma00903 (Undocumented) SBML MML
bma00910 Nitrogen metabolism SBML MML
bma00920 Sulfur metabolism SBML MML
bma00930 Caprolactam degradation SBML MML
bma00940 (Undocumented) SBML MML
bma00941 (Undocumented) SBML MML
bma00950 (Undocumented) SBML MML
bma00960 (Undocumented) SBML MML
bma00970 Aminoacyl-tRNA biosynthesis SBML MML
bma00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bma00982 (Undocumented) SBML MML
bma00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.