This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bpe: Bordetella pertussis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bpe00010 Glycolysis / Gluconeogenesis SBML MML
bpe00020 Citrate cycle (TCA cycle) SBML MML
bpe00030 Pentose phosphate pathway SBML MML
bpe00031 (Undocumented) SBML MML
bpe00040 Pentose and glucuronate interconversions SBML MML
bpe00051 Fructose and mannose metabolism SBML MML
bpe00053 Ascorbate and aldarate metabolism SBML MML
bpe00061 Fatty acid biosynthesis SBML MML
bpe00062 Fatty acid elongation in mitochondria SBML MML
bpe00071 Fatty acid metabolism SBML MML
bpe00072 Synthesis and degradation of ketone bodies SBML MML
bpe00100 (Undocumented) SBML MML
bpe00120 (Undocumented) SBML MML
bpe00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bpe00220 (Undocumented) SBML MML
bpe00230 Purine metabolism SBML MML
bpe00240 Pyrimidine metabolism SBML MML
bpe00251 (Undocumented) SBML MML
bpe00252 (Undocumented) SBML MML
bpe00260 Glycine, serine and threonine metabolism SBML MML
bpe00271 (Undocumented) SBML MML
bpe00272 (Undocumented) SBML MML
bpe00280 Valine, leucine and isoleucine degradation SBML MML
bpe00281 Geraniol degradation SBML MML
bpe00290 Valine, leucine and isoleucine biosynthesis SBML MML
bpe00300 Lysine biosynthesis SBML MML
bpe00310 Lysine degradation SBML MML
bpe00330 Arginine and proline metabolism SBML MML
bpe00340 Histidine metabolism SBML MML
bpe00350 Tyrosine metabolism SBML MML
bpe00360 Phenylalanine metabolism SBML MML
bpe00361 gamma-Hexachlorocyclohexane degradation SBML MML
bpe00362 (Undocumented) SBML MML
bpe00364 Fluorobenzoate degradation SBML MML
bpe00380 Tryptophan metabolism SBML MML
bpe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bpe00401 Novobiocin biosynthesis SBML MML
bpe00410 beta-Alanine metabolism SBML MML
bpe00430 Taurine and hypotaurine metabolism SBML MML
bpe00450 Selenoamino acid metabolism SBML MML
bpe00460 (Undocumented) SBML MML
bpe00471 D-Glutamine and D-glutamate metabolism SBML MML
bpe00472 D-Arginine and D-ornithine metabolism SBML MML
bpe00473 D-Alanine metabolism SBML MML
bpe00480 Glutathione metabolism SBML MML
bpe00500 Starch and sucrose metabolism SBML MML
bpe00520 Amino sugar and nucleotide sugar metabolism SBML MML
bpe00521 Streptomycin biosynthesis SBML MML
bpe00523 Polyketide sugar unit biosynthesis SBML MML
bpe00530 (Undocumented) SBML MML
bpe00540 Lipopolysaccharide biosynthesis SBML MML
bpe00550 Peptidoglycan biosynthesis SBML MML
bpe00561 Glycerolipid metabolism SBML MML
bpe00562 Inositol phosphate metabolism SBML MML
bpe00564 Glycerophospholipid metabolism SBML MML
bpe00565 Ether lipid metabolism SBML MML
bpe00590 Arachidonic acid metabolism SBML MML
bpe00592 alpha-Linolenic acid metabolism SBML MML
bpe00620 Pyruvate metabolism SBML MML
bpe00623 2,4-Dichlorobenzoate degradation SBML MML
bpe00624 1- and 2-Methylnaphthalene degradation SBML MML
bpe00626 Naphthalene and anthracene degradation SBML MML
bpe00627 1,4-Dichlorobenzene degradation SBML MML
bpe00628 Fluorene degradation SBML MML
bpe00630 Glyoxylate and dicarboxylate metabolism SBML MML
bpe00631 1,2-Dichloroethane degradation SBML MML
bpe00632 (Undocumented) SBML MML
bpe00633 Trinitrotoluene degradation SBML MML
bpe00640 Propanoate metabolism SBML MML
bpe00641 3-Chloroacrylic acid degradation SBML MML
bpe00643 Styrene degradation SBML MML
bpe00650 Butanoate metabolism SBML MML
bpe00660 C5-Branched dibasic acid metabolism SBML MML
bpe00670 One carbon pool by folate SBML MML
bpe00680 Methane metabolism SBML MML
bpe00710 (Undocumented) SBML MML
bpe00720 (Undocumented) SBML MML
bpe00730 Thiamine metabolism SBML MML
bpe00740 Riboflavin metabolism SBML MML
bpe00750 Vitamin B6 metabolism SBML MML
bpe00760 Nicotinate and nicotinamide metabolism SBML MML
bpe00770 Pantothenate and CoA biosynthesis SBML MML
bpe00780 Biotin metabolism SBML MML
bpe00785 Lipoic acid metabolism SBML MML
bpe00790 Folate biosynthesis SBML MML
bpe00860 Porphyrin and chlorophyll metabolism SBML MML
bpe00900 Terpenoid backbone biosynthesis SBML MML
bpe00903 (Undocumented) SBML MML
bpe00910 Nitrogen metabolism SBML MML
bpe00920 Sulfur metabolism SBML MML
bpe00930 Caprolactam degradation SBML MML
bpe00940 (Undocumented) SBML MML
bpe00950 (Undocumented) SBML MML
bpe00970 Aminoacyl-tRNA biosynthesis SBML MML
bpe00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bpe00982 (Undocumented) SBML MML
bpe00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.