This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bph: Burkholderia phymatum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bph00010 Glycolysis / Gluconeogenesis SBML MML
bph00020 Citrate cycle (TCA cycle) SBML MML
bph00030 Pentose phosphate pathway SBML MML
bph00031 (Undocumented) SBML MML
bph00040 Pentose and glucuronate interconversions SBML MML
bph00051 Fructose and mannose metabolism SBML MML
bph00052 Galactose metabolism SBML MML
bph00053 Ascorbate and aldarate metabolism SBML MML
bph00061 Fatty acid biosynthesis SBML MML
bph00062 Fatty acid elongation in mitochondria SBML MML
bph00071 Fatty acid metabolism SBML MML
bph00072 Synthesis and degradation of ketone bodies SBML MML
bph00100 (Undocumented) SBML MML
bph00120 (Undocumented) SBML MML
bph00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bph00150 Androgen and estrogen metabolism SBML MML
bph00220 (Undocumented) SBML MML
bph00230 Purine metabolism SBML MML
bph00240 Pyrimidine metabolism SBML MML
bph00251 (Undocumented) SBML MML
bph00252 (Undocumented) SBML MML
bph00260 Glycine, serine and threonine metabolism SBML MML
bph00271 (Undocumented) SBML MML
bph00272 (Undocumented) SBML MML
bph00280 Valine, leucine and isoleucine degradation SBML MML
bph00281 Geraniol degradation SBML MML
bph00290 Valine, leucine and isoleucine biosynthesis SBML MML
bph00300 Lysine biosynthesis SBML MML
bph00310 Lysine degradation SBML MML
bph00311 Penicillin and cephalosporin biosynthesis SBML MML
bph00330 Arginine and proline metabolism SBML MML
bph00340 Histidine metabolism SBML MML
bph00350 Tyrosine metabolism SBML MML
bph00360 Phenylalanine metabolism SBML MML
bph00361 gamma-Hexachlorocyclohexane degradation SBML MML
bph00362 (Undocumented) SBML MML
bph00363 Bisphenol A degradation SBML MML
bph00364 Fluorobenzoate degradation SBML MML
bph00380 Tryptophan metabolism SBML MML
bph00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bph00401 Novobiocin biosynthesis SBML MML
bph00410 beta-Alanine metabolism SBML MML
bph00430 Taurine and hypotaurine metabolism SBML MML
bph00440 Phosphonate and phosphinate metabolism SBML MML
bph00450 Selenoamino acid metabolism SBML MML
bph00460 (Undocumented) SBML MML
bph00471 D-Glutamine and D-glutamate metabolism SBML MML
bph00473 D-Alanine metabolism SBML MML
bph00480 Glutathione metabolism SBML MML
bph00500 Starch and sucrose metabolism SBML MML
bph00520 Amino sugar and nucleotide sugar metabolism SBML MML
bph00521 Streptomycin biosynthesis SBML MML
bph00523 Polyketide sugar unit biosynthesis SBML MML
bph00530 (Undocumented) SBML MML
bph00540 Lipopolysaccharide biosynthesis SBML MML
bph00550 Peptidoglycan biosynthesis SBML MML
bph00561 Glycerolipid metabolism SBML MML
bph00562 Inositol phosphate metabolism SBML MML
bph00564 Glycerophospholipid metabolism SBML MML
bph00565 Ether lipid metabolism SBML MML
bph00590 Arachidonic acid metabolism SBML MML
bph00592 alpha-Linolenic acid metabolism SBML MML
bph00600 Sphingolipid metabolism SBML MML
bph00620 Pyruvate metabolism SBML MML
bph00621 (Undocumented) SBML MML
bph00622 Toluene and xylene degradation SBML MML
bph00623 2,4-Dichlorobenzoate degradation SBML MML
bph00624 1- and 2-Methylnaphthalene degradation SBML MML
bph00625 (Undocumented) SBML MML
bph00626 Naphthalene and anthracene degradation SBML MML
bph00627 1,4-Dichlorobenzene degradation SBML MML
bph00628 Fluorene degradation SBML MML
bph00629 Carbazole degradation SBML MML
bph00630 Glyoxylate and dicarboxylate metabolism SBML MML
bph00631 1,2-Dichloroethane degradation SBML MML
bph00632 (Undocumented) SBML MML
bph00633 Trinitrotoluene degradation SBML MML
bph00640 Propanoate metabolism SBML MML
bph00641 3-Chloroacrylic acid degradation SBML MML
bph00642 Ethylbenzene degradation SBML MML
bph00643 Styrene degradation SBML MML
bph00650 Butanoate metabolism SBML MML
bph00660 C5-Branched dibasic acid metabolism SBML MML
bph00670 One carbon pool by folate SBML MML
bph00680 Methane metabolism SBML MML
bph00710 (Undocumented) SBML MML
bph00720 (Undocumented) SBML MML
bph00730 Thiamine metabolism SBML MML
bph00740 Riboflavin metabolism SBML MML
bph00750 Vitamin B6 metabolism SBML MML
bph00760 Nicotinate and nicotinamide metabolism SBML MML
bph00770 Pantothenate and CoA biosynthesis SBML MML
bph00780 Biotin metabolism SBML MML
bph00790 Folate biosynthesis SBML MML
bph00791 Atrazine degradation SBML MML
bph00860 Porphyrin and chlorophyll metabolism SBML MML
bph00900 Terpenoid backbone biosynthesis SBML MML
bph00903 (Undocumented) SBML MML
bph00910 Nitrogen metabolism SBML MML
bph00920 Sulfur metabolism SBML MML
bph00930 Caprolactam degradation SBML MML
bph00940 (Undocumented) SBML MML
bph00941 (Undocumented) SBML MML
bph00950 (Undocumented) SBML MML
bph00960 (Undocumented) SBML MML
bph00970 Aminoacyl-tRNA biosynthesis SBML MML
bph00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bph00982 (Undocumented) SBML MML
bph00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.