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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bpl: Burkholderia pseudomallei 1106a

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bpl00010 Glycolysis / Gluconeogenesis SBML MML
bpl00020 Citrate cycle (TCA cycle) SBML MML
bpl00030 Pentose phosphate pathway SBML MML
bpl00031 (Undocumented) SBML MML
bpl00040 Pentose and glucuronate interconversions SBML MML
bpl00051 Fructose and mannose metabolism SBML MML
bpl00052 Galactose metabolism SBML MML
bpl00053 Ascorbate and aldarate metabolism SBML MML
bpl00061 Fatty acid biosynthesis SBML MML
bpl00062 Fatty acid elongation in mitochondria SBML MML
bpl00071 Fatty acid metabolism SBML MML
bpl00072 Synthesis and degradation of ketone bodies SBML MML
bpl00100 (Undocumented) SBML MML
bpl00120 (Undocumented) SBML MML
bpl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bpl00150 Androgen and estrogen metabolism SBML MML
bpl00220 (Undocumented) SBML MML
bpl00230 Purine metabolism SBML MML
bpl00240 Pyrimidine metabolism SBML MML
bpl00251 (Undocumented) SBML MML
bpl00252 (Undocumented) SBML MML
bpl00260 Glycine, serine and threonine metabolism SBML MML
bpl00271 (Undocumented) SBML MML
bpl00272 (Undocumented) SBML MML
bpl00280 Valine, leucine and isoleucine degradation SBML MML
bpl00281 Geraniol degradation SBML MML
bpl00290 Valine, leucine and isoleucine biosynthesis SBML MML
bpl00300 Lysine biosynthesis SBML MML
bpl00310 Lysine degradation SBML MML
bpl00311 Penicillin and cephalosporin biosynthesis SBML MML
bpl00330 Arginine and proline metabolism SBML MML
bpl00340 Histidine metabolism SBML MML
bpl00350 Tyrosine metabolism SBML MML
bpl00360 Phenylalanine metabolism SBML MML
bpl00361 gamma-Hexachlorocyclohexane degradation SBML MML
bpl00362 (Undocumented) SBML MML
bpl00363 Bisphenol A degradation SBML MML
bpl00364 Fluorobenzoate degradation SBML MML
bpl00380 Tryptophan metabolism SBML MML
bpl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bpl00401 Novobiocin biosynthesis SBML MML
bpl00410 beta-Alanine metabolism SBML MML
bpl00430 Taurine and hypotaurine metabolism SBML MML
bpl00440 Phosphonate and phosphinate metabolism SBML MML
bpl00450 Selenoamino acid metabolism SBML MML
bpl00460 (Undocumented) SBML MML
bpl00471 D-Glutamine and D-glutamate metabolism SBML MML
bpl00472 D-Arginine and D-ornithine metabolism SBML MML
bpl00473 D-Alanine metabolism SBML MML
bpl00480 Glutathione metabolism SBML MML
bpl00500 Starch and sucrose metabolism SBML MML
bpl00510 (Undocumented) SBML MML
bpl00520 Amino sugar and nucleotide sugar metabolism SBML MML
bpl00521 Streptomycin biosynthesis SBML MML
bpl00523 Polyketide sugar unit biosynthesis SBML MML
bpl00530 (Undocumented) SBML MML
bpl00540 Lipopolysaccharide biosynthesis SBML MML
bpl00550 Peptidoglycan biosynthesis SBML MML
bpl00561 Glycerolipid metabolism SBML MML
bpl00562 Inositol phosphate metabolism SBML MML
bpl00564 Glycerophospholipid metabolism SBML MML
bpl00565 Ether lipid metabolism SBML MML
bpl00590 Arachidonic acid metabolism SBML MML
bpl00592 alpha-Linolenic acid metabolism SBML MML
bpl00600 Sphingolipid metabolism SBML MML
bpl00620 Pyruvate metabolism SBML MML
bpl00622 Toluene and xylene degradation SBML MML
bpl00623 2,4-Dichlorobenzoate degradation SBML MML
bpl00624 1- and 2-Methylnaphthalene degradation SBML MML
bpl00626 Naphthalene and anthracene degradation SBML MML
bpl00627 1,4-Dichlorobenzene degradation SBML MML
bpl00628 Fluorene degradation SBML MML
bpl00629 Carbazole degradation SBML MML
bpl00630 Glyoxylate and dicarboxylate metabolism SBML MML
bpl00631 1,2-Dichloroethane degradation SBML MML
bpl00632 (Undocumented) SBML MML
bpl00640 Propanoate metabolism SBML MML
bpl00641 3-Chloroacrylic acid degradation SBML MML
bpl00642 Ethylbenzene degradation SBML MML
bpl00643 Styrene degradation SBML MML
bpl00650 Butanoate metabolism SBML MML
bpl00660 C5-Branched dibasic acid metabolism SBML MML
bpl00670 One carbon pool by folate SBML MML
bpl00680 Methane metabolism SBML MML
bpl00710 (Undocumented) SBML MML
bpl00720 (Undocumented) SBML MML
bpl00730 Thiamine metabolism SBML MML
bpl00740 Riboflavin metabolism SBML MML
bpl00750 Vitamin B6 metabolism SBML MML
bpl00760 Nicotinate and nicotinamide metabolism SBML MML
bpl00770 Pantothenate and CoA biosynthesis SBML MML
bpl00780 Biotin metabolism SBML MML
bpl00785 Lipoic acid metabolism SBML MML
bpl00790 Folate biosynthesis SBML MML
bpl00791 Atrazine degradation SBML MML
bpl00860 Porphyrin and chlorophyll metabolism SBML MML
bpl00900 Terpenoid backbone biosynthesis SBML MML
bpl00903 (Undocumented) SBML MML
bpl00904 (Undocumented) SBML MML
bpl00910 Nitrogen metabolism SBML MML
bpl00920 Sulfur metabolism SBML MML
bpl00930 Caprolactam degradation SBML MML
bpl00940 (Undocumented) SBML MML
bpl00941 (Undocumented) SBML MML
bpl00950 (Undocumented) SBML MML
bpl00960 (Undocumented) SBML MML
bpl00970 Aminoacyl-tRNA biosynthesis SBML MML
bpl00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bpl00982 (Undocumented) SBML MML
bpl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.