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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bpt: Bordetella petrii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bpt00010 Glycolysis / Gluconeogenesis SBML MML
bpt00020 Citrate cycle (TCA cycle) SBML MML
bpt00030 Pentose phosphate pathway SBML MML
bpt00031 (Undocumented) SBML MML
bpt00040 Pentose and glucuronate interconversions SBML MML
bpt00051 Fructose and mannose metabolism SBML MML
bpt00052 Galactose metabolism SBML MML
bpt00053 Ascorbate and aldarate metabolism SBML MML
bpt00061 Fatty acid biosynthesis SBML MML
bpt00062 Fatty acid elongation in mitochondria SBML MML
bpt00071 Fatty acid metabolism SBML MML
bpt00072 Synthesis and degradation of ketone bodies SBML MML
bpt00100 (Undocumented) SBML MML
bpt00120 (Undocumented) SBML MML
bpt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bpt00220 (Undocumented) SBML MML
bpt00230 Purine metabolism SBML MML
bpt00240 Pyrimidine metabolism SBML MML
bpt00251 (Undocumented) SBML MML
bpt00252 (Undocumented) SBML MML
bpt00260 Glycine, serine and threonine metabolism SBML MML
bpt00271 (Undocumented) SBML MML
bpt00272 (Undocumented) SBML MML
bpt00280 Valine, leucine and isoleucine degradation SBML MML
bpt00281 Geraniol degradation SBML MML
bpt00290 Valine, leucine and isoleucine biosynthesis SBML MML
bpt00300 Lysine biosynthesis SBML MML
bpt00310 Lysine degradation SBML MML
bpt00311 Penicillin and cephalosporin biosynthesis SBML MML
bpt00330 Arginine and proline metabolism SBML MML
bpt00340 Histidine metabolism SBML MML
bpt00350 Tyrosine metabolism SBML MML
bpt00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
bpt00360 Phenylalanine metabolism SBML MML
bpt00361 gamma-Hexachlorocyclohexane degradation SBML MML
bpt00362 (Undocumented) SBML MML
bpt00363 Bisphenol A degradation SBML MML
bpt00364 Fluorobenzoate degradation SBML MML
bpt00380 Tryptophan metabolism SBML MML
bpt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bpt00401 Novobiocin biosynthesis SBML MML
bpt00410 beta-Alanine metabolism SBML MML
bpt00430 Taurine and hypotaurine metabolism SBML MML
bpt00450 Selenoamino acid metabolism SBML MML
bpt00460 (Undocumented) SBML MML
bpt00471 D-Glutamine and D-glutamate metabolism SBML MML
bpt00472 D-Arginine and D-ornithine metabolism SBML MML
bpt00473 D-Alanine metabolism SBML MML
bpt00480 Glutathione metabolism SBML MML
bpt00500 Starch and sucrose metabolism SBML MML
bpt00520 Amino sugar and nucleotide sugar metabolism SBML MML
bpt00521 Streptomycin biosynthesis SBML MML
bpt00523 Polyketide sugar unit biosynthesis SBML MML
bpt00530 (Undocumented) SBML MML
bpt00540 Lipopolysaccharide biosynthesis SBML MML
bpt00550 Peptidoglycan biosynthesis SBML MML
bpt00561 Glycerolipid metabolism SBML MML
bpt00562 Inositol phosphate metabolism SBML MML
bpt00564 Glycerophospholipid metabolism SBML MML
bpt00590 Arachidonic acid metabolism SBML MML
bpt00592 alpha-Linolenic acid metabolism SBML MML
bpt00620 Pyruvate metabolism SBML MML
bpt00621 (Undocumented) SBML MML
bpt00622 Toluene and xylene degradation SBML MML
bpt00623 2,4-Dichlorobenzoate degradation SBML MML
bpt00624 1- and 2-Methylnaphthalene degradation SBML MML
bpt00625 (Undocumented) SBML MML
bpt00626 Naphthalene and anthracene degradation SBML MML
bpt00627 1,4-Dichlorobenzene degradation SBML MML
bpt00628 Fluorene degradation SBML MML
bpt00629 Carbazole degradation SBML MML
bpt00630 Glyoxylate and dicarboxylate metabolism SBML MML
bpt00631 1,2-Dichloroethane degradation SBML MML
bpt00632 (Undocumented) SBML MML
bpt00633 Trinitrotoluene degradation SBML MML
bpt00640 Propanoate metabolism SBML MML
bpt00641 3-Chloroacrylic acid degradation SBML MML
bpt00642 Ethylbenzene degradation SBML MML
bpt00643 Styrene degradation SBML MML
bpt00650 Butanoate metabolism SBML MML
bpt00660 C5-Branched dibasic acid metabolism SBML MML
bpt00670 One carbon pool by folate SBML MML
bpt00680 Methane metabolism SBML MML
bpt00710 (Undocumented) SBML MML
bpt00720 (Undocumented) SBML MML
bpt00730 Thiamine metabolism SBML MML
bpt00740 Riboflavin metabolism SBML MML
bpt00750 Vitamin B6 metabolism SBML MML
bpt00760 Nicotinate and nicotinamide metabolism SBML MML
bpt00770 Pantothenate and CoA biosynthesis SBML MML
bpt00780 Biotin metabolism SBML MML
bpt00785 Lipoic acid metabolism SBML MML
bpt00790 Folate biosynthesis SBML MML
bpt00860 Porphyrin and chlorophyll metabolism SBML MML
bpt00900 Terpenoid backbone biosynthesis SBML MML
bpt00903 (Undocumented) SBML MML
bpt00910 Nitrogen metabolism SBML MML
bpt00920 Sulfur metabolism SBML MML
bpt00930 Caprolactam degradation SBML MML
bpt00940 (Undocumented) SBML MML
bpt00950 (Undocumented) SBML MML
bpt00960 (Undocumented) SBML MML
bpt00970 Aminoacyl-tRNA biosynthesis SBML MML
bpt00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bpt00982 (Undocumented) SBML MML
bpt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.