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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism btl: Bacillus thuringiensis Al Hakam

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
btl00010 Glycolysis / Gluconeogenesis SBML MML
btl00020 Citrate cycle (TCA cycle) SBML MML
btl00030 Pentose phosphate pathway SBML MML
btl00031 (Undocumented) SBML MML
btl00040 Pentose and glucuronate interconversions SBML MML
btl00051 Fructose and mannose metabolism SBML MML
btl00052 Galactose metabolism SBML MML
btl00053 Ascorbate and aldarate metabolism SBML MML
btl00061 Fatty acid biosynthesis SBML MML
btl00062 Fatty acid elongation in mitochondria SBML MML
btl00071 Fatty acid metabolism SBML MML
btl00072 Synthesis and degradation of ketone bodies SBML MML
btl00100 (Undocumented) SBML MML
btl00120 (Undocumented) SBML MML
btl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
btl00150 Androgen and estrogen metabolism SBML MML
btl00220 (Undocumented) SBML MML
btl00230 Purine metabolism SBML MML
btl00240 Pyrimidine metabolism SBML MML
btl00251 (Undocumented) SBML MML
btl00252 (Undocumented) SBML MML
btl00260 Glycine, serine and threonine metabolism SBML MML
btl00271 (Undocumented) SBML MML
btl00272 (Undocumented) SBML MML
btl00280 Valine, leucine and isoleucine degradation SBML MML
btl00281 Geraniol degradation SBML MML
btl00290 Valine, leucine and isoleucine biosynthesis SBML MML
btl00300 Lysine biosynthesis SBML MML
btl00310 Lysine degradation SBML MML
btl00311 Penicillin and cephalosporin biosynthesis SBML MML
btl00330 Arginine and proline metabolism SBML MML
btl00340 Histidine metabolism SBML MML
btl00350 Tyrosine metabolism SBML MML
btl00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
btl00360 Phenylalanine metabolism SBML MML
btl00361 gamma-Hexachlorocyclohexane degradation SBML MML
btl00362 (Undocumented) SBML MML
btl00363 Bisphenol A degradation SBML MML
btl00380 Tryptophan metabolism SBML MML
btl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
btl00401 Novobiocin biosynthesis SBML MML
btl00410 beta-Alanine metabolism SBML MML
btl00430 Taurine and hypotaurine metabolism SBML MML
btl00440 Phosphonate and phosphinate metabolism SBML MML
btl00450 Selenoamino acid metabolism SBML MML
btl00460 (Undocumented) SBML MML
btl00471 D-Glutamine and D-glutamate metabolism SBML MML
btl00472 D-Arginine and D-ornithine metabolism SBML MML
btl00473 D-Alanine metabolism SBML MML
btl00480 Glutathione metabolism SBML MML
btl00500 Starch and sucrose metabolism SBML MML
btl00510 (Undocumented) SBML MML
btl00520 Amino sugar and nucleotide sugar metabolism SBML MML
btl00521 Streptomycin biosynthesis SBML MML
btl00523 Polyketide sugar unit biosynthesis SBML MML
btl00530 (Undocumented) SBML MML
btl00550 Peptidoglycan biosynthesis SBML MML
btl00561 Glycerolipid metabolism SBML MML
btl00562 Inositol phosphate metabolism SBML MML
btl00564 Glycerophospholipid metabolism SBML MML
btl00565 Ether lipid metabolism SBML MML
btl00590 Arachidonic acid metabolism SBML MML
btl00620 Pyruvate metabolism SBML MML
btl00621 (Undocumented) SBML MML
btl00622 Toluene and xylene degradation SBML MML
btl00624 1- and 2-Methylnaphthalene degradation SBML MML
btl00626 Naphthalene and anthracene degradation SBML MML
btl00627 1,4-Dichlorobenzene degradation SBML MML
btl00628 Fluorene degradation SBML MML
btl00629 Carbazole degradation SBML MML
btl00630 Glyoxylate and dicarboxylate metabolism SBML MML
btl00631 1,2-Dichloroethane degradation SBML MML
btl00632 (Undocumented) SBML MML
btl00640 Propanoate metabolism SBML MML
btl00641 3-Chloroacrylic acid degradation SBML MML
btl00642 Ethylbenzene degradation SBML MML
btl00643 Styrene degradation SBML MML
btl00650 Butanoate metabolism SBML MML
btl00660 C5-Branched dibasic acid metabolism SBML MML
btl00670 One carbon pool by folate SBML MML
btl00680 Methane metabolism SBML MML
btl00710 (Undocumented) SBML MML
btl00720 (Undocumented) SBML MML
btl00730 Thiamine metabolism SBML MML
btl00740 Riboflavin metabolism SBML MML
btl00750 Vitamin B6 metabolism SBML MML
btl00760 Nicotinate and nicotinamide metabolism SBML MML
btl00770 Pantothenate and CoA biosynthesis SBML MML
btl00780 Biotin metabolism SBML MML
btl00785 Lipoic acid metabolism SBML MML
btl00790 Folate biosynthesis SBML MML
btl00860 Porphyrin and chlorophyll metabolism SBML MML
btl00900 Terpenoid backbone biosynthesis SBML MML
btl00903 (Undocumented) SBML MML
btl00910 Nitrogen metabolism SBML MML
btl00920 Sulfur metabolism SBML MML
btl00930 Caprolactam degradation SBML MML
btl00960 (Undocumented) SBML MML
btl00970 Aminoacyl-tRNA biosynthesis SBML MML
btl00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
btl00982 (Undocumented) SBML MML
btl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.