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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bur: Burkholderia sp. 383

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bur00010 Glycolysis / Gluconeogenesis SBML MML
bur00020 Citrate cycle (TCA cycle) SBML MML
bur00030 Pentose phosphate pathway SBML MML
bur00031 (Undocumented) SBML MML
bur00040 Pentose and glucuronate interconversions SBML MML
bur00051 Fructose and mannose metabolism SBML MML
bur00052 Galactose metabolism SBML MML
bur00053 Ascorbate and aldarate metabolism SBML MML
bur00061 Fatty acid biosynthesis SBML MML
bur00062 Fatty acid elongation in mitochondria SBML MML
bur00071 Fatty acid metabolism SBML MML
bur00072 Synthesis and degradation of ketone bodies SBML MML
bur00100 (Undocumented) SBML MML
bur00120 (Undocumented) SBML MML
bur00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bur00140 (Undocumented) SBML MML
bur00150 Androgen and estrogen metabolism SBML MML
bur00220 (Undocumented) SBML MML
bur00230 Purine metabolism SBML MML
bur00240 Pyrimidine metabolism SBML MML
bur00251 (Undocumented) SBML MML
bur00252 (Undocumented) SBML MML
bur00260 Glycine, serine and threonine metabolism SBML MML
bur00271 (Undocumented) SBML MML
bur00272 (Undocumented) SBML MML
bur00280 Valine, leucine and isoleucine degradation SBML MML
bur00281 Geraniol degradation SBML MML
bur00290 Valine, leucine and isoleucine biosynthesis SBML MML
bur00300 Lysine biosynthesis SBML MML
bur00310 Lysine degradation SBML MML
bur00311 Penicillin and cephalosporin biosynthesis SBML MML
bur00330 Arginine and proline metabolism SBML MML
bur00340 Histidine metabolism SBML MML
bur00350 Tyrosine metabolism SBML MML
bur00360 Phenylalanine metabolism SBML MML
bur00361 gamma-Hexachlorocyclohexane degradation SBML MML
bur00362 (Undocumented) SBML MML
bur00364 Fluorobenzoate degradation SBML MML
bur00380 Tryptophan metabolism SBML MML
bur00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bur00401 Novobiocin biosynthesis SBML MML
bur00410 beta-Alanine metabolism SBML MML
bur00430 Taurine and hypotaurine metabolism SBML MML
bur00450 Selenoamino acid metabolism SBML MML
bur00460 (Undocumented) SBML MML
bur00471 D-Glutamine and D-glutamate metabolism SBML MML
bur00472 D-Arginine and D-ornithine metabolism SBML MML
bur00473 D-Alanine metabolism SBML MML
bur00480 Glutathione metabolism SBML MML
bur00500 Starch and sucrose metabolism SBML MML
bur00520 Amino sugar and nucleotide sugar metabolism SBML MML
bur00521 Streptomycin biosynthesis SBML MML
bur00523 Polyketide sugar unit biosynthesis SBML MML
bur00530 (Undocumented) SBML MML
bur00540 Lipopolysaccharide biosynthesis SBML MML
bur00550 Peptidoglycan biosynthesis SBML MML
bur00561 Glycerolipid metabolism SBML MML
bur00562 Inositol phosphate metabolism SBML MML
bur00564 Glycerophospholipid metabolism SBML MML
bur00565 Ether lipid metabolism SBML MML
bur00590 Arachidonic acid metabolism SBML MML
bur00592 alpha-Linolenic acid metabolism SBML MML
bur00600 Sphingolipid metabolism SBML MML
bur00620 Pyruvate metabolism SBML MML
bur00621 (Undocumented) SBML MML
bur00622 Toluene and xylene degradation SBML MML
bur00623 2,4-Dichlorobenzoate degradation SBML MML
bur00624 1- and 2-Methylnaphthalene degradation SBML MML
bur00626 Naphthalene and anthracene degradation SBML MML
bur00627 1,4-Dichlorobenzene degradation SBML MML
bur00628 Fluorene degradation SBML MML
bur00629 Carbazole degradation SBML MML
bur00630 Glyoxylate and dicarboxylate metabolism SBML MML
bur00631 1,2-Dichloroethane degradation SBML MML
bur00632 (Undocumented) SBML MML
bur00633 Trinitrotoluene degradation SBML MML
bur00640 Propanoate metabolism SBML MML
bur00641 3-Chloroacrylic acid degradation SBML MML
bur00642 Ethylbenzene degradation SBML MML
bur00643 Styrene degradation SBML MML
bur00650 Butanoate metabolism SBML MML
bur00660 C5-Branched dibasic acid metabolism SBML MML
bur00670 One carbon pool by folate SBML MML
bur00680 Methane metabolism SBML MML
bur00710 (Undocumented) SBML MML
bur00720 (Undocumented) SBML MML
bur00730 Thiamine metabolism SBML MML
bur00740 Riboflavin metabolism SBML MML
bur00750 Vitamin B6 metabolism SBML MML
bur00760 Nicotinate and nicotinamide metabolism SBML MML
bur00770 Pantothenate and CoA biosynthesis SBML MML
bur00780 Biotin metabolism SBML MML
bur00785 Lipoic acid metabolism SBML MML
bur00790 Folate biosynthesis SBML MML
bur00791 Atrazine degradation SBML MML
bur00860 Porphyrin and chlorophyll metabolism SBML MML
bur00900 Terpenoid backbone biosynthesis SBML MML
bur00903 (Undocumented) SBML MML
bur00910 Nitrogen metabolism SBML MML
bur00920 Sulfur metabolism SBML MML
bur00930 Caprolactam degradation SBML MML
bur00940 (Undocumented) SBML MML
bur00941 (Undocumented) SBML MML
bur00950 (Undocumented) SBML MML
bur00960 (Undocumented) SBML MML
bur00970 Aminoacyl-tRNA biosynthesis SBML MML
bur00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bur00982 (Undocumented) SBML MML
bur00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.