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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cbd: Coxiella burnetii Dugway 5J108-111

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cbd00010 Glycolysis / Gluconeogenesis SBML MML
cbd00020 Citrate cycle (TCA cycle) SBML MML
cbd00030 Pentose phosphate pathway SBML MML
cbd00031 (Undocumented) SBML MML
cbd00040 Pentose and glucuronate interconversions SBML MML
cbd00051 Fructose and mannose metabolism SBML MML
cbd00052 Galactose metabolism SBML MML
cbd00061 Fatty acid biosynthesis SBML MML
cbd00062 Fatty acid elongation in mitochondria SBML MML
cbd00071 Fatty acid metabolism SBML MML
cbd00072 Synthesis and degradation of ketone bodies SBML MML
cbd00100 (Undocumented) SBML MML
cbd00120 (Undocumented) SBML MML
cbd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cbd00220 (Undocumented) SBML MML
cbd00230 Purine metabolism SBML MML
cbd00240 Pyrimidine metabolism SBML MML
cbd00251 (Undocumented) SBML MML
cbd00252 (Undocumented) SBML MML
cbd00260 Glycine, serine and threonine metabolism SBML MML
cbd00271 (Undocumented) SBML MML
cbd00272 (Undocumented) SBML MML
cbd00280 Valine, leucine and isoleucine degradation SBML MML
cbd00281 Geraniol degradation SBML MML
cbd00290 Valine, leucine and isoleucine biosynthesis SBML MML
cbd00300 Lysine biosynthesis SBML MML
cbd00310 Lysine degradation SBML MML
cbd00311 Penicillin and cephalosporin biosynthesis SBML MML
cbd00330 Arginine and proline metabolism SBML MML
cbd00340 Histidine metabolism SBML MML
cbd00350 Tyrosine metabolism SBML MML
cbd00360 Phenylalanine metabolism SBML MML
cbd00361 gamma-Hexachlorocyclohexane degradation SBML MML
cbd00380 Tryptophan metabolism SBML MML
cbd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cbd00410 beta-Alanine metabolism SBML MML
cbd00450 Selenoamino acid metabolism SBML MML
cbd00471 D-Glutamine and D-glutamate metabolism SBML MML
cbd00473 D-Alanine metabolism SBML MML
cbd00480 Glutathione metabolism SBML MML
cbd00500 Starch and sucrose metabolism SBML MML
cbd00520 Amino sugar and nucleotide sugar metabolism SBML MML
cbd00521 Streptomycin biosynthesis SBML MML
cbd00523 Polyketide sugar unit biosynthesis SBML MML
cbd00530 (Undocumented) SBML MML
cbd00540 Lipopolysaccharide biosynthesis SBML MML
cbd00550 Peptidoglycan biosynthesis SBML MML
cbd00561 Glycerolipid metabolism SBML MML
cbd00562 Inositol phosphate metabolism SBML MML
cbd00564 Glycerophospholipid metabolism SBML MML
cbd00592 alpha-Linolenic acid metabolism SBML MML
cbd00620 Pyruvate metabolism SBML MML
cbd00624 1- and 2-Methylnaphthalene degradation SBML MML
cbd00626 Naphthalene and anthracene degradation SBML MML
cbd00630 Glyoxylate and dicarboxylate metabolism SBML MML
cbd00632 (Undocumented) SBML MML
cbd00640 Propanoate metabolism SBML MML
cbd00641 3-Chloroacrylic acid degradation SBML MML
cbd00642 Ethylbenzene degradation SBML MML
cbd00650 Butanoate metabolism SBML MML
cbd00670 One carbon pool by folate SBML MML
cbd00680 Methane metabolism SBML MML
cbd00710 (Undocumented) SBML MML
cbd00720 (Undocumented) SBML MML
cbd00730 Thiamine metabolism SBML MML
cbd00740 Riboflavin metabolism SBML MML
cbd00750 Vitamin B6 metabolism SBML MML
cbd00760 Nicotinate and nicotinamide metabolism SBML MML
cbd00770 Pantothenate and CoA biosynthesis SBML MML
cbd00780 Biotin metabolism SBML MML
cbd00790 Folate biosynthesis SBML MML
cbd00791 Atrazine degradation SBML MML
cbd00860 Porphyrin and chlorophyll metabolism SBML MML
cbd00900 Terpenoid backbone biosynthesis SBML MML
cbd00903 (Undocumented) SBML MML
cbd00910 Nitrogen metabolism SBML MML
cbd00920 Sulfur metabolism SBML MML
cbd00930 Caprolactam degradation SBML MML
cbd00950 (Undocumented) SBML MML
cbd00960 (Undocumented) SBML MML
cbd00970 Aminoacyl-tRNA biosynthesis SBML MML
cbd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.