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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cch: Chlorobium chlorochromatii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cch00010 Glycolysis / Gluconeogenesis SBML MML
cch00020 Citrate cycle (TCA cycle) SBML MML
cch00030 Pentose phosphate pathway SBML MML
cch00031 (Undocumented) SBML MML
cch00040 Pentose and glucuronate interconversions SBML MML
cch00051 Fructose and mannose metabolism SBML MML
cch00052 Galactose metabolism SBML MML
cch00061 Fatty acid biosynthesis SBML MML
cch00071 Fatty acid metabolism SBML MML
cch00100 (Undocumented) SBML MML
cch00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cch00140 (Undocumented) SBML MML
cch00150 Androgen and estrogen metabolism SBML MML
cch00220 (Undocumented) SBML MML
cch00230 Purine metabolism SBML MML
cch00240 Pyrimidine metabolism SBML MML
cch00251 (Undocumented) SBML MML
cch00252 (Undocumented) SBML MML
cch00260 Glycine, serine and threonine metabolism SBML MML
cch00271 (Undocumented) SBML MML
cch00272 (Undocumented) SBML MML
cch00280 Valine, leucine and isoleucine degradation SBML MML
cch00290 Valine, leucine and isoleucine biosynthesis SBML MML
cch00300 Lysine biosynthesis SBML MML
cch00330 Arginine and proline metabolism SBML MML
cch00340 Histidine metabolism SBML MML
cch00350 Tyrosine metabolism SBML MML
cch00360 Phenylalanine metabolism SBML MML
cch00380 Tryptophan metabolism SBML MML
cch00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cch00401 Novobiocin biosynthesis SBML MML
cch00410 beta-Alanine metabolism SBML MML
cch00450 Selenoamino acid metabolism SBML MML
cch00471 D-Glutamine and D-glutamate metabolism SBML MML
cch00473 D-Alanine metabolism SBML MML
cch00480 Glutathione metabolism SBML MML
cch00500 Starch and sucrose metabolism SBML MML
cch00520 Amino sugar and nucleotide sugar metabolism SBML MML
cch00521 Streptomycin biosynthesis SBML MML
cch00523 Polyketide sugar unit biosynthesis SBML MML
cch00530 (Undocumented) SBML MML
cch00540 Lipopolysaccharide biosynthesis SBML MML
cch00550 Peptidoglycan biosynthesis SBML MML
cch00562 Inositol phosphate metabolism SBML MML
cch00564 Glycerophospholipid metabolism SBML MML
cch00620 Pyruvate metabolism SBML MML
cch00624 1- and 2-Methylnaphthalene degradation SBML MML
cch00630 Glyoxylate and dicarboxylate metabolism SBML MML
cch00640 Propanoate metabolism SBML MML
cch00641 3-Chloroacrylic acid degradation SBML MML
cch00650 Butanoate metabolism SBML MML
cch00660 C5-Branched dibasic acid metabolism SBML MML
cch00670 One carbon pool by folate SBML MML
cch00680 Methane metabolism SBML MML
cch00710 (Undocumented) SBML MML
cch00720 (Undocumented) SBML MML
cch00730 Thiamine metabolism SBML MML
cch00740 Riboflavin metabolism SBML MML
cch00750 Vitamin B6 metabolism SBML MML
cch00760 Nicotinate and nicotinamide metabolism SBML MML
cch00770 Pantothenate and CoA biosynthesis SBML MML
cch00780 Biotin metabolism SBML MML
cch00785 Lipoic acid metabolism SBML MML
cch00790 Folate biosynthesis SBML MML
cch00860 Porphyrin and chlorophyll metabolism SBML MML
cch00900 Terpenoid backbone biosynthesis SBML MML
cch00906 Carotenoid biosynthesis SBML MML
cch00910 Nitrogen metabolism SBML MML
cch00920 Sulfur metabolism SBML MML
cch00941 (Undocumented) SBML MML
cch00970 Aminoacyl-tRNA biosynthesis SBML MML
cch00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cch00982 (Undocumented) SBML MML
cch00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.