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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ccr: Caulobacter crescentus CB15

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ccr00010 Glycolysis / Gluconeogenesis SBML MML
ccr00020 Citrate cycle (TCA cycle) SBML MML
ccr00030 Pentose phosphate pathway SBML MML
ccr00031 (Undocumented) SBML MML
ccr00040 Pentose and glucuronate interconversions SBML MML
ccr00051 Fructose and mannose metabolism SBML MML
ccr00052 Galactose metabolism SBML MML
ccr00053 Ascorbate and aldarate metabolism SBML MML
ccr00061 Fatty acid biosynthesis SBML MML
ccr00062 Fatty acid elongation in mitochondria SBML MML
ccr00071 Fatty acid metabolism SBML MML
ccr00072 Synthesis and degradation of ketone bodies SBML MML
ccr00100 (Undocumented) SBML MML
ccr00120 (Undocumented) SBML MML
ccr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ccr00220 (Undocumented) SBML MML
ccr00230 Purine metabolism SBML MML
ccr00240 Pyrimidine metabolism SBML MML
ccr00251 (Undocumented) SBML MML
ccr00252 (Undocumented) SBML MML
ccr00260 Glycine, serine and threonine metabolism SBML MML
ccr00271 (Undocumented) SBML MML
ccr00272 (Undocumented) SBML MML
ccr00280 Valine, leucine and isoleucine degradation SBML MML
ccr00281 Geraniol degradation SBML MML
ccr00290 Valine, leucine and isoleucine biosynthesis SBML MML
ccr00300 Lysine biosynthesis SBML MML
ccr00310 Lysine degradation SBML MML
ccr00330 Arginine and proline metabolism SBML MML
ccr00340 Histidine metabolism SBML MML
ccr00350 Tyrosine metabolism SBML MML
ccr00360 Phenylalanine metabolism SBML MML
ccr00361 gamma-Hexachlorocyclohexane degradation SBML MML
ccr00362 (Undocumented) SBML MML
ccr00364 Fluorobenzoate degradation SBML MML
ccr00380 Tryptophan metabolism SBML MML
ccr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ccr00401 Novobiocin biosynthesis SBML MML
ccr00410 beta-Alanine metabolism SBML MML
ccr00430 Taurine and hypotaurine metabolism SBML MML
ccr00450 Selenoamino acid metabolism SBML MML
ccr00460 (Undocumented) SBML MML
ccr00471 D-Glutamine and D-glutamate metabolism SBML MML
ccr00472 D-Arginine and D-ornithine metabolism SBML MML
ccr00473 D-Alanine metabolism SBML MML
ccr00480 Glutathione metabolism SBML MML
ccr00500 Starch and sucrose metabolism SBML MML
ccr00520 Amino sugar and nucleotide sugar metabolism SBML MML
ccr00521 Streptomycin biosynthesis SBML MML
ccr00523 Polyketide sugar unit biosynthesis SBML MML
ccr00530 (Undocumented) SBML MML
ccr00540 Lipopolysaccharide biosynthesis SBML MML
ccr00550 Peptidoglycan biosynthesis SBML MML
ccr00561 Glycerolipid metabolism SBML MML
ccr00562 Inositol phosphate metabolism SBML MML
ccr00564 Glycerophospholipid metabolism SBML MML
ccr00565 Ether lipid metabolism SBML MML
ccr00590 Arachidonic acid metabolism SBML MML
ccr00592 alpha-Linolenic acid metabolism SBML MML
ccr00620 Pyruvate metabolism SBML MML
ccr00621 (Undocumented) SBML MML
ccr00622 Toluene and xylene degradation SBML MML
ccr00623 2,4-Dichlorobenzoate degradation SBML MML
ccr00624 1- and 2-Methylnaphthalene degradation SBML MML
ccr00626 Naphthalene and anthracene degradation SBML MML
ccr00627 1,4-Dichlorobenzene degradation SBML MML
ccr00628 Fluorene degradation SBML MML
ccr00630 Glyoxylate and dicarboxylate metabolism SBML MML
ccr00631 1,2-Dichloroethane degradation SBML MML
ccr00632 (Undocumented) SBML MML
ccr00640 Propanoate metabolism SBML MML
ccr00641 3-Chloroacrylic acid degradation SBML MML
ccr00642 Ethylbenzene degradation SBML MML
ccr00643 Styrene degradation SBML MML
ccr00650 Butanoate metabolism SBML MML
ccr00660 C5-Branched dibasic acid metabolism SBML MML
ccr00670 One carbon pool by folate SBML MML
ccr00680 Methane metabolism SBML MML
ccr00710 (Undocumented) SBML MML
ccr00720 (Undocumented) SBML MML
ccr00730 Thiamine metabolism SBML MML
ccr00740 Riboflavin metabolism SBML MML
ccr00750 Vitamin B6 metabolism SBML MML
ccr00760 Nicotinate and nicotinamide metabolism SBML MML
ccr00770 Pantothenate and CoA biosynthesis SBML MML
ccr00780 Biotin metabolism SBML MML
ccr00785 Lipoic acid metabolism SBML MML
ccr00790 Folate biosynthesis SBML MML
ccr00860 Porphyrin and chlorophyll metabolism SBML MML
ccr00900 Terpenoid backbone biosynthesis SBML MML
ccr00903 (Undocumented) SBML MML
ccr00910 Nitrogen metabolism SBML MML
ccr00920 Sulfur metabolism SBML MML
ccr00930 Caprolactam degradation SBML MML
ccr00940 (Undocumented) SBML MML
ccr00970 Aminoacyl-tRNA biosynthesis SBML MML
ccr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ccr00982 (Undocumented) SBML MML
ccr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.