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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cdi: Corynebacterium diphtheriae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cdi00010 Glycolysis / Gluconeogenesis SBML MML
cdi00020 Citrate cycle (TCA cycle) SBML MML
cdi00030 Pentose phosphate pathway SBML MML
cdi00040 Pentose and glucuronate interconversions SBML MML
cdi00051 Fructose and mannose metabolism SBML MML
cdi00052 Galactose metabolism SBML MML
cdi00053 Ascorbate and aldarate metabolism SBML MML
cdi00061 Fatty acid biosynthesis SBML MML
cdi00071 Fatty acid metabolism SBML MML
cdi00100 (Undocumented) SBML MML
cdi00120 (Undocumented) SBML MML
cdi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cdi00220 (Undocumented) SBML MML
cdi00230 Purine metabolism SBML MML
cdi00240 Pyrimidine metabolism SBML MML
cdi00251 (Undocumented) SBML MML
cdi00252 (Undocumented) SBML MML
cdi00260 Glycine, serine and threonine metabolism SBML MML
cdi00271 (Undocumented) SBML MML
cdi00272 (Undocumented) SBML MML
cdi00280 Valine, leucine and isoleucine degradation SBML MML
cdi00281 Geraniol degradation SBML MML
cdi00290 Valine, leucine and isoleucine biosynthesis SBML MML
cdi00300 Lysine biosynthesis SBML MML
cdi00310 Lysine degradation SBML MML
cdi00330 Arginine and proline metabolism SBML MML
cdi00340 Histidine metabolism SBML MML
cdi00350 Tyrosine metabolism SBML MML
cdi00360 Phenylalanine metabolism SBML MML
cdi00380 Tryptophan metabolism SBML MML
cdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cdi00401 Novobiocin biosynthesis SBML MML
cdi00410 beta-Alanine metabolism SBML MML
cdi00430 Taurine and hypotaurine metabolism SBML MML
cdi00450 Selenoamino acid metabolism SBML MML
cdi00460 (Undocumented) SBML MML
cdi00471 D-Glutamine and D-glutamate metabolism SBML MML
cdi00473 D-Alanine metabolism SBML MML
cdi00480 Glutathione metabolism SBML MML
cdi00500 Starch and sucrose metabolism SBML MML
cdi00510 (Undocumented) SBML MML
cdi00520 Amino sugar and nucleotide sugar metabolism SBML MML
cdi00521 Streptomycin biosynthesis SBML MML
cdi00523 Polyketide sugar unit biosynthesis SBML MML
cdi00530 (Undocumented) SBML MML
cdi00550 Peptidoglycan biosynthesis SBML MML
cdi00561 Glycerolipid metabolism SBML MML
cdi00562 Inositol phosphate metabolism SBML MML
cdi00564 Glycerophospholipid metabolism SBML MML
cdi00590 Arachidonic acid metabolism SBML MML
cdi00620 Pyruvate metabolism SBML MML
cdi00624 1- and 2-Methylnaphthalene degradation SBML MML
cdi00630 Glyoxylate and dicarboxylate metabolism SBML MML
cdi00632 (Undocumented) SBML MML
cdi00640 Propanoate metabolism SBML MML
cdi00641 3-Chloroacrylic acid degradation SBML MML
cdi00650 Butanoate metabolism SBML MML
cdi00660 C5-Branched dibasic acid metabolism SBML MML
cdi00670 One carbon pool by folate SBML MML
cdi00680 Methane metabolism SBML MML
cdi00710 (Undocumented) SBML MML
cdi00720 (Undocumented) SBML MML
cdi00730 Thiamine metabolism SBML MML
cdi00740 Riboflavin metabolism SBML MML
cdi00750 Vitamin B6 metabolism SBML MML
cdi00760 Nicotinate and nicotinamide metabolism SBML MML
cdi00770 Pantothenate and CoA biosynthesis SBML MML
cdi00780 Biotin metabolism SBML MML
cdi00785 Lipoic acid metabolism SBML MML
cdi00790 Folate biosynthesis SBML MML
cdi00860 Porphyrin and chlorophyll metabolism SBML MML
cdi00900 Terpenoid backbone biosynthesis SBML MML
cdi00903 (Undocumented) SBML MML
cdi00910 Nitrogen metabolism SBML MML
cdi00920 Sulfur metabolism SBML MML
cdi00930 Caprolactam degradation SBML MML
cdi00960 (Undocumented) SBML MML
cdi00970 Aminoacyl-tRNA biosynthesis SBML MML
cdi00982 (Undocumented) SBML MML
cdi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.