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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cef: Corynebacterium efficiens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cef00010 Glycolysis / Gluconeogenesis SBML MML
cef00020 Citrate cycle (TCA cycle) SBML MML
cef00030 Pentose phosphate pathway SBML MML
cef00040 Pentose and glucuronate interconversions SBML MML
cef00051 Fructose and mannose metabolism SBML MML
cef00052 Galactose metabolism SBML MML
cef00053 Ascorbate and aldarate metabolism SBML MML
cef00061 Fatty acid biosynthesis SBML MML
cef00062 Fatty acid elongation in mitochondria SBML MML
cef00071 Fatty acid metabolism SBML MML
cef00072 Synthesis and degradation of ketone bodies SBML MML
cef00100 (Undocumented) SBML MML
cef00120 (Undocumented) SBML MML
cef00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cef00150 Androgen and estrogen metabolism SBML MML
cef00220 (Undocumented) SBML MML
cef00230 Purine metabolism SBML MML
cef00240 Pyrimidine metabolism SBML MML
cef00251 (Undocumented) SBML MML
cef00252 (Undocumented) SBML MML
cef00260 Glycine, serine and threonine metabolism SBML MML
cef00271 (Undocumented) SBML MML
cef00272 (Undocumented) SBML MML
cef00280 Valine, leucine and isoleucine degradation SBML MML
cef00281 Geraniol degradation SBML MML
cef00290 Valine, leucine and isoleucine biosynthesis SBML MML
cef00300 Lysine biosynthesis SBML MML
cef00310 Lysine degradation SBML MML
cef00330 Arginine and proline metabolism SBML MML
cef00340 Histidine metabolism SBML MML
cef00350 Tyrosine metabolism SBML MML
cef00360 Phenylalanine metabolism SBML MML
cef00361 gamma-Hexachlorocyclohexane degradation SBML MML
cef00362 (Undocumented) SBML MML
cef00364 Fluorobenzoate degradation SBML MML
cef00380 Tryptophan metabolism SBML MML
cef00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cef00401 Novobiocin biosynthesis SBML MML
cef00410 beta-Alanine metabolism SBML MML
cef00430 Taurine and hypotaurine metabolism SBML MML
cef00450 Selenoamino acid metabolism SBML MML
cef00460 (Undocumented) SBML MML
cef00471 D-Glutamine and D-glutamate metabolism SBML MML
cef00473 D-Alanine metabolism SBML MML
cef00480 Glutathione metabolism SBML MML
cef00500 Starch and sucrose metabolism SBML MML
cef00520 Amino sugar and nucleotide sugar metabolism SBML MML
cef00521 Streptomycin biosynthesis SBML MML
cef00523 Polyketide sugar unit biosynthesis SBML MML
cef00530 (Undocumented) SBML MML
cef00550 Peptidoglycan biosynthesis SBML MML
cef00561 Glycerolipid metabolism SBML MML
cef00562 Inositol phosphate metabolism SBML MML
cef00564 Glycerophospholipid metabolism SBML MML
cef00590 Arachidonic acid metabolism SBML MML
cef00592 alpha-Linolenic acid metabolism SBML MML
cef00620 Pyruvate metabolism SBML MML
cef00623 2,4-Dichlorobenzoate degradation SBML MML
cef00624 1- and 2-Methylnaphthalene degradation SBML MML
cef00626 Naphthalene and anthracene degradation SBML MML
cef00630 Glyoxylate and dicarboxylate metabolism SBML MML
cef00632 (Undocumented) SBML MML
cef00640 Propanoate metabolism SBML MML
cef00641 3-Chloroacrylic acid degradation SBML MML
cef00642 Ethylbenzene degradation SBML MML
cef00643 Styrene degradation SBML MML
cef00650 Butanoate metabolism SBML MML
cef00660 C5-Branched dibasic acid metabolism SBML MML
cef00670 One carbon pool by folate SBML MML
cef00680 Methane metabolism SBML MML
cef00710 (Undocumented) SBML MML
cef00720 (Undocumented) SBML MML
cef00730 Thiamine metabolism SBML MML
cef00740 Riboflavin metabolism SBML MML
cef00750 Vitamin B6 metabolism SBML MML
cef00760 Nicotinate and nicotinamide metabolism SBML MML
cef00770 Pantothenate and CoA biosynthesis SBML MML
cef00780 Biotin metabolism SBML MML
cef00785 Lipoic acid metabolism SBML MML
cef00790 Folate biosynthesis SBML MML
cef00860 Porphyrin and chlorophyll metabolism SBML MML
cef00900 Terpenoid backbone biosynthesis SBML MML
cef00903 (Undocumented) SBML MML
cef00910 Nitrogen metabolism SBML MML
cef00920 Sulfur metabolism SBML MML
cef00930 Caprolactam degradation SBML MML
cef00940 (Undocumented) SBML MML
cef00950 (Undocumented) SBML MML
cef00960 (Undocumented) SBML MML
cef00970 Aminoacyl-tRNA biosynthesis SBML MML
cef00982 (Undocumented) SBML MML
cef00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.