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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cff: Campylobacter fetus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cff00010 Glycolysis / Gluconeogenesis SBML MML
cff00020 Citrate cycle (TCA cycle) SBML MML
cff00030 Pentose phosphate pathway SBML MML
cff00031 (Undocumented) SBML MML
cff00040 Pentose and glucuronate interconversions SBML MML
cff00051 Fructose and mannose metabolism SBML MML
cff00052 Galactose metabolism SBML MML
cff00061 Fatty acid biosynthesis SBML MML
cff00100 (Undocumented) SBML MML
cff00120 (Undocumented) SBML MML
cff00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cff00220 (Undocumented) SBML MML
cff00230 Purine metabolism SBML MML
cff00240 Pyrimidine metabolism SBML MML
cff00251 (Undocumented) SBML MML
cff00252 (Undocumented) SBML MML
cff00260 Glycine, serine and threonine metabolism SBML MML
cff00271 (Undocumented) SBML MML
cff00272 (Undocumented) SBML MML
cff00280 Valine, leucine and isoleucine degradation SBML MML
cff00281 Geraniol degradation SBML MML
cff00290 Valine, leucine and isoleucine biosynthesis SBML MML
cff00300 Lysine biosynthesis SBML MML
cff00310 Lysine degradation SBML MML
cff00330 Arginine and proline metabolism SBML MML
cff00340 Histidine metabolism SBML MML
cff00350 Tyrosine metabolism SBML MML
cff00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
cff00360 Phenylalanine metabolism SBML MML
cff00361 gamma-Hexachlorocyclohexane degradation SBML MML
cff00362 (Undocumented) SBML MML
cff00363 Bisphenol A degradation SBML MML
cff00380 Tryptophan metabolism SBML MML
cff00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cff00401 Novobiocin biosynthesis SBML MML
cff00410 beta-Alanine metabolism SBML MML
cff00430 Taurine and hypotaurine metabolism SBML MML
cff00450 Selenoamino acid metabolism SBML MML
cff00460 (Undocumented) SBML MML
cff00471 D-Glutamine and D-glutamate metabolism SBML MML
cff00472 D-Arginine and D-ornithine metabolism SBML MML
cff00473 D-Alanine metabolism SBML MML
cff00480 Glutathione metabolism SBML MML
cff00500 Starch and sucrose metabolism SBML MML
cff00520 Amino sugar and nucleotide sugar metabolism SBML MML
cff00521 Streptomycin biosynthesis SBML MML
cff00530 (Undocumented) SBML MML
cff00540 Lipopolysaccharide biosynthesis SBML MML
cff00550 Peptidoglycan biosynthesis SBML MML
cff00561 Glycerolipid metabolism SBML MML
cff00564 Glycerophospholipid metabolism SBML MML
cff00620 Pyruvate metabolism SBML MML
cff00624 1- and 2-Methylnaphthalene degradation SBML MML
cff00626 Naphthalene and anthracene degradation SBML MML
cff00628 Fluorene degradation SBML MML
cff00630 Glyoxylate and dicarboxylate metabolism SBML MML
cff00632 (Undocumented) SBML MML
cff00640 Propanoate metabolism SBML MML
cff00650 Butanoate metabolism SBML MML
cff00660 C5-Branched dibasic acid metabolism SBML MML
cff00670 One carbon pool by folate SBML MML
cff00680 Methane metabolism SBML MML
cff00710 (Undocumented) SBML MML
cff00720 (Undocumented) SBML MML
cff00730 Thiamine metabolism SBML MML
cff00740 Riboflavin metabolism SBML MML
cff00750 Vitamin B6 metabolism SBML MML
cff00760 Nicotinate and nicotinamide metabolism SBML MML
cff00770 Pantothenate and CoA biosynthesis SBML MML
cff00780 Biotin metabolism SBML MML
cff00790 Folate biosynthesis SBML MML
cff00830 Retinol metabolism SBML MML
cff00860 Porphyrin and chlorophyll metabolism SBML MML
cff00900 Terpenoid backbone biosynthesis SBML MML
cff00903 (Undocumented) SBML MML
cff00910 Nitrogen metabolism SBML MML
cff00920 Sulfur metabolism SBML MML
cff00940 (Undocumented) SBML MML
cff00950 (Undocumented) SBML MML
cff00960 (Undocumented) SBML MML
cff00970 Aminoacyl-tRNA biosynthesis SBML MML
cff00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.