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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cgb: Corynebacterium glutamicum ATCC 13032 (Bielefeld)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cgb00010 Glycolysis / Gluconeogenesis SBML MML
cgb00020 Citrate cycle (TCA cycle) SBML MML
cgb00030 Pentose phosphate pathway SBML MML
cgb00031 (Undocumented) SBML MML
cgb00040 Pentose and glucuronate interconversions SBML MML
cgb00051 Fructose and mannose metabolism SBML MML
cgb00052 Galactose metabolism SBML MML
cgb00053 Ascorbate and aldarate metabolism SBML MML
cgb00061 Fatty acid biosynthesis SBML MML
cgb00071 Fatty acid metabolism SBML MML
cgb00072 Synthesis and degradation of ketone bodies SBML MML
cgb00100 (Undocumented) SBML MML
cgb00120 (Undocumented) SBML MML
cgb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cgb00150 Androgen and estrogen metabolism SBML MML
cgb00220 (Undocumented) SBML MML
cgb00230 Purine metabolism SBML MML
cgb00240 Pyrimidine metabolism SBML MML
cgb00251 (Undocumented) SBML MML
cgb00252 (Undocumented) SBML MML
cgb00260 Glycine, serine and threonine metabolism SBML MML
cgb00271 (Undocumented) SBML MML
cgb00272 (Undocumented) SBML MML
cgb00280 Valine, leucine and isoleucine degradation SBML MML
cgb00281 Geraniol degradation SBML MML
cgb00290 Valine, leucine and isoleucine biosynthesis SBML MML
cgb00300 Lysine biosynthesis SBML MML
cgb00310 Lysine degradation SBML MML
cgb00330 Arginine and proline metabolism SBML MML
cgb00340 Histidine metabolism SBML MML
cgb00350 Tyrosine metabolism SBML MML
cgb00360 Phenylalanine metabolism SBML MML
cgb00361 gamma-Hexachlorocyclohexane degradation SBML MML
cgb00362 (Undocumented) SBML MML
cgb00363 Bisphenol A degradation SBML MML
cgb00364 Fluorobenzoate degradation SBML MML
cgb00380 Tryptophan metabolism SBML MML
cgb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cgb00401 Novobiocin biosynthesis SBML MML
cgb00410 beta-Alanine metabolism SBML MML
cgb00430 Taurine and hypotaurine metabolism SBML MML
cgb00450 Selenoamino acid metabolism SBML MML
cgb00460 (Undocumented) SBML MML
cgb00471 D-Glutamine and D-glutamate metabolism SBML MML
cgb00473 D-Alanine metabolism SBML MML
cgb00480 Glutathione metabolism SBML MML
cgb00500 Starch and sucrose metabolism SBML MML
cgb00510 (Undocumented) SBML MML
cgb00520 Amino sugar and nucleotide sugar metabolism SBML MML
cgb00521 Streptomycin biosynthesis SBML MML
cgb00523 Polyketide sugar unit biosynthesis SBML MML
cgb00530 (Undocumented) SBML MML
cgb00550 Peptidoglycan biosynthesis SBML MML
cgb00561 Glycerolipid metabolism SBML MML
cgb00562 Inositol phosphate metabolism SBML MML
cgb00564 Glycerophospholipid metabolism SBML MML
cgb00590 Arachidonic acid metabolism SBML MML
cgb00620 Pyruvate metabolism SBML MML
cgb00622 Toluene and xylene degradation SBML MML
cgb00623 2,4-Dichlorobenzoate degradation SBML MML
cgb00624 1- and 2-Methylnaphthalene degradation SBML MML
cgb00626 Naphthalene and anthracene degradation SBML MML
cgb00627 1,4-Dichlorobenzene degradation SBML MML
cgb00630 Glyoxylate and dicarboxylate metabolism SBML MML
cgb00632 (Undocumented) SBML MML
cgb00640 Propanoate metabolism SBML MML
cgb00641 3-Chloroacrylic acid degradation SBML MML
cgb00650 Butanoate metabolism SBML MML
cgb00660 C5-Branched dibasic acid metabolism SBML MML
cgb00670 One carbon pool by folate SBML MML
cgb00680 Methane metabolism SBML MML
cgb00710 (Undocumented) SBML MML
cgb00720 (Undocumented) SBML MML
cgb00730 Thiamine metabolism SBML MML
cgb00740 Riboflavin metabolism SBML MML
cgb00750 Vitamin B6 metabolism SBML MML
cgb00760 Nicotinate and nicotinamide metabolism SBML MML
cgb00770 Pantothenate and CoA biosynthesis SBML MML
cgb00780 Biotin metabolism SBML MML
cgb00785 Lipoic acid metabolism SBML MML
cgb00790 Folate biosynthesis SBML MML
cgb00860 Porphyrin and chlorophyll metabolism SBML MML
cgb00900 Terpenoid backbone biosynthesis SBML MML
cgb00903 (Undocumented) SBML MML
cgb00910 Nitrogen metabolism SBML MML
cgb00920 Sulfur metabolism SBML MML
cgb00930 Caprolactam degradation SBML MML
cgb00940 (Undocumented) SBML MML
cgb00960 (Undocumented) SBML MML
cgb00970 Aminoacyl-tRNA biosynthesis SBML MML
cgb00982 (Undocumented) SBML MML
cgb00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.