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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cja: Cellvibrio japonicus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cja00010 Glycolysis / Gluconeogenesis SBML MML
cja00020 Citrate cycle (TCA cycle) SBML MML
cja00030 Pentose phosphate pathway SBML MML
cja00040 Pentose and glucuronate interconversions SBML MML
cja00051 Fructose and mannose metabolism SBML MML
cja00052 Galactose metabolism SBML MML
cja00053 Ascorbate and aldarate metabolism SBML MML
cja00061 Fatty acid biosynthesis SBML MML
cja00071 Fatty acid metabolism SBML MML
cja00100 (Undocumented) SBML MML
cja00120 (Undocumented) SBML MML
cja00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cja00150 Androgen and estrogen metabolism SBML MML
cja00220 (Undocumented) SBML MML
cja00230 Purine metabolism SBML MML
cja00240 Pyrimidine metabolism SBML MML
cja00251 (Undocumented) SBML MML
cja00252 (Undocumented) SBML MML
cja00260 Glycine, serine and threonine metabolism SBML MML
cja00271 (Undocumented) SBML MML
cja00272 (Undocumented) SBML MML
cja00280 Valine, leucine and isoleucine degradation SBML MML
cja00281 Geraniol degradation SBML MML
cja00290 Valine, leucine and isoleucine biosynthesis SBML MML
cja00300 Lysine biosynthesis SBML MML
cja00310 Lysine degradation SBML MML
cja00330 Arginine and proline metabolism SBML MML
cja00340 Histidine metabolism SBML MML
cja00350 Tyrosine metabolism SBML MML
cja00360 Phenylalanine metabolism SBML MML
cja00361 gamma-Hexachlorocyclohexane degradation SBML MML
cja00362 (Undocumented) SBML MML
cja00364 Fluorobenzoate degradation SBML MML
cja00380 Tryptophan metabolism SBML MML
cja00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cja00401 Novobiocin biosynthesis SBML MML
cja00410 beta-Alanine metabolism SBML MML
cja00430 Taurine and hypotaurine metabolism SBML MML
cja00440 Phosphonate and phosphinate metabolism SBML MML
cja00450 Selenoamino acid metabolism SBML MML
cja00460 (Undocumented) SBML MML
cja00471 D-Glutamine and D-glutamate metabolism SBML MML
cja00473 D-Alanine metabolism SBML MML
cja00480 Glutathione metabolism SBML MML
cja00500 Starch and sucrose metabolism SBML MML
cja00520 Amino sugar and nucleotide sugar metabolism SBML MML
cja00521 Streptomycin biosynthesis SBML MML
cja00523 Polyketide sugar unit biosynthesis SBML MML
cja00530 (Undocumented) SBML MML
cja00540 Lipopolysaccharide biosynthesis SBML MML
cja00550 Peptidoglycan biosynthesis SBML MML
cja00561 Glycerolipid metabolism SBML MML
cja00562 Inositol phosphate metabolism SBML MML
cja00564 Glycerophospholipid metabolism SBML MML
cja00590 Arachidonic acid metabolism SBML MML
cja00592 alpha-Linolenic acid metabolism SBML MML
cja00600 Sphingolipid metabolism SBML MML
cja00620 Pyruvate metabolism SBML MML
cja00624 1- and 2-Methylnaphthalene degradation SBML MML
cja00627 1,4-Dichlorobenzene degradation SBML MML
cja00630 Glyoxylate and dicarboxylate metabolism SBML MML
cja00632 (Undocumented) SBML MML
cja00640 Propanoate metabolism SBML MML
cja00650 Butanoate metabolism SBML MML
cja00660 C5-Branched dibasic acid metabolism SBML MML
cja00670 One carbon pool by folate SBML MML
cja00680 Methane metabolism SBML MML
cja00710 (Undocumented) SBML MML
cja00720 (Undocumented) SBML MML
cja00730 Thiamine metabolism SBML MML
cja00740 Riboflavin metabolism SBML MML
cja00750 Vitamin B6 metabolism SBML MML
cja00760 Nicotinate and nicotinamide metabolism SBML MML
cja00770 Pantothenate and CoA biosynthesis SBML MML
cja00780 Biotin metabolism SBML MML
cja00790 Folate biosynthesis SBML MML
cja00791 Atrazine degradation SBML MML
cja00860 Porphyrin and chlorophyll metabolism SBML MML
cja00900 Terpenoid backbone biosynthesis SBML MML
cja00903 (Undocumented) SBML MML
cja00910 Nitrogen metabolism SBML MML
cja00920 Sulfur metabolism SBML MML
cja00930 Caprolactam degradation SBML MML
cja00940 (Undocumented) SBML MML
cja00950 (Undocumented) SBML MML
cja00970 Aminoacyl-tRNA biosynthesis SBML MML
cja00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.