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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cjr: Campylobacter jejuni RM1221

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cjr00010 Glycolysis / Gluconeogenesis SBML MML
cjr00020 Citrate cycle (TCA cycle) SBML MML
cjr00030 Pentose phosphate pathway SBML MML
cjr00040 Pentose and glucuronate interconversions SBML MML
cjr00051 Fructose and mannose metabolism SBML MML
cjr00052 Galactose metabolism SBML MML
cjr00061 Fatty acid biosynthesis SBML MML
cjr00100 (Undocumented) SBML MML
cjr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cjr00220 (Undocumented) SBML MML
cjr00230 Purine metabolism SBML MML
cjr00240 Pyrimidine metabolism SBML MML
cjr00251 (Undocumented) SBML MML
cjr00252 (Undocumented) SBML MML
cjr00260 Glycine, serine and threonine metabolism SBML MML
cjr00271 (Undocumented) SBML MML
cjr00272 (Undocumented) SBML MML
cjr00280 Valine, leucine and isoleucine degradation SBML MML
cjr00290 Valine, leucine and isoleucine biosynthesis SBML MML
cjr00300 Lysine biosynthesis SBML MML
cjr00310 Lysine degradation SBML MML
cjr00330 Arginine and proline metabolism SBML MML
cjr00340 Histidine metabolism SBML MML
cjr00350 Tyrosine metabolism SBML MML
cjr00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
cjr00360 Phenylalanine metabolism SBML MML
cjr00362 (Undocumented) SBML MML
cjr00380 Tryptophan metabolism SBML MML
cjr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cjr00401 Novobiocin biosynthesis SBML MML
cjr00410 beta-Alanine metabolism SBML MML
cjr00430 Taurine and hypotaurine metabolism SBML MML
cjr00450 Selenoamino acid metabolism SBML MML
cjr00460 (Undocumented) SBML MML
cjr00471 D-Glutamine and D-glutamate metabolism SBML MML
cjr00473 D-Alanine metabolism SBML MML
cjr00480 Glutathione metabolism SBML MML
cjr00500 Starch and sucrose metabolism SBML MML
cjr00520 Amino sugar and nucleotide sugar metabolism SBML MML
cjr00521 Streptomycin biosynthesis SBML MML
cjr00530 (Undocumented) SBML MML
cjr00540 Lipopolysaccharide biosynthesis SBML MML
cjr00550 Peptidoglycan biosynthesis SBML MML
cjr00561 Glycerolipid metabolism SBML MML
cjr00564 Glycerophospholipid metabolism SBML MML
cjr00620 Pyruvate metabolism SBML MML
cjr00628 Fluorene degradation SBML MML
cjr00630 Glyoxylate and dicarboxylate metabolism SBML MML
cjr00632 (Undocumented) SBML MML
cjr00640 Propanoate metabolism SBML MML
cjr00650 Butanoate metabolism SBML MML
cjr00660 C5-Branched dibasic acid metabolism SBML MML
cjr00670 One carbon pool by folate SBML MML
cjr00680 Methane metabolism SBML MML
cjr00710 (Undocumented) SBML MML
cjr00720 (Undocumented) SBML MML
cjr00730 Thiamine metabolism SBML MML
cjr00740 Riboflavin metabolism SBML MML
cjr00750 Vitamin B6 metabolism SBML MML
cjr00760 Nicotinate and nicotinamide metabolism SBML MML
cjr00770 Pantothenate and CoA biosynthesis SBML MML
cjr00780 Biotin metabolism SBML MML
cjr00790 Folate biosynthesis SBML MML
cjr00860 Porphyrin and chlorophyll metabolism SBML MML
cjr00900 Terpenoid backbone biosynthesis SBML MML
cjr00910 Nitrogen metabolism SBML MML
cjr00920 Sulfur metabolism SBML MML
cjr00930 Caprolactam degradation SBML MML
cjr00940 (Undocumented) SBML MML
cjr00950 (Undocumented) SBML MML
cjr00970 Aminoacyl-tRNA biosynthesis SBML MML
cjr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.