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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ckl: Clostridium kluyveri DSM 555

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ckl00010 Glycolysis / Gluconeogenesis SBML MML
ckl00020 Citrate cycle (TCA cycle) SBML MML
ckl00030 Pentose phosphate pathway SBML MML
ckl00040 Pentose and glucuronate interconversions SBML MML
ckl00051 Fructose and mannose metabolism SBML MML
ckl00052 Galactose metabolism SBML MML
ckl00053 Ascorbate and aldarate metabolism SBML MML
ckl00061 Fatty acid biosynthesis SBML MML
ckl00062 Fatty acid elongation in mitochondria SBML MML
ckl00071 Fatty acid metabolism SBML MML
ckl00100 (Undocumented) SBML MML
ckl00120 (Undocumented) SBML MML
ckl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ckl00220 (Undocumented) SBML MML
ckl00230 Purine metabolism SBML MML
ckl00240 Pyrimidine metabolism SBML MML
ckl00251 (Undocumented) SBML MML
ckl00252 (Undocumented) SBML MML
ckl00260 Glycine, serine and threonine metabolism SBML MML
ckl00271 (Undocumented) SBML MML
ckl00272 (Undocumented) SBML MML
ckl00280 Valine, leucine and isoleucine degradation SBML MML
ckl00281 Geraniol degradation SBML MML
ckl00290 Valine, leucine and isoleucine biosynthesis SBML MML
ckl00300 Lysine biosynthesis SBML MML
ckl00310 Lysine degradation SBML MML
ckl00330 Arginine and proline metabolism SBML MML
ckl00340 Histidine metabolism SBML MML
ckl00350 Tyrosine metabolism SBML MML
ckl00360 Phenylalanine metabolism SBML MML
ckl00362 (Undocumented) SBML MML
ckl00380 Tryptophan metabolism SBML MML
ckl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ckl00401 Novobiocin biosynthesis SBML MML
ckl00410 beta-Alanine metabolism SBML MML
ckl00430 Taurine and hypotaurine metabolism SBML MML
ckl00440 Phosphonate and phosphinate metabolism SBML MML
ckl00450 Selenoamino acid metabolism SBML MML
ckl00460 (Undocumented) SBML MML
ckl00471 D-Glutamine and D-glutamate metabolism SBML MML
ckl00473 D-Alanine metabolism SBML MML
ckl00500 Starch and sucrose metabolism SBML MML
ckl00510 (Undocumented) SBML MML
ckl00520 Amino sugar and nucleotide sugar metabolism SBML MML
ckl00521 Streptomycin biosynthesis SBML MML
ckl00530 (Undocumented) SBML MML
ckl00550 Peptidoglycan biosynthesis SBML MML
ckl00561 Glycerolipid metabolism SBML MML
ckl00564 Glycerophospholipid metabolism SBML MML
ckl00620 Pyruvate metabolism SBML MML
ckl00624 1- and 2-Methylnaphthalene degradation SBML MML
ckl00625 (Undocumented) SBML MML
ckl00630 Glyoxylate and dicarboxylate metabolism SBML MML
ckl00632 (Undocumented) SBML MML
ckl00640 Propanoate metabolism SBML MML
ckl00641 3-Chloroacrylic acid degradation SBML MML
ckl00650 Butanoate metabolism SBML MML
ckl00670 One carbon pool by folate SBML MML
ckl00680 Methane metabolism SBML MML
ckl00710 (Undocumented) SBML MML
ckl00720 (Undocumented) SBML MML
ckl00730 Thiamine metabolism SBML MML
ckl00740 Riboflavin metabolism SBML MML
ckl00750 Vitamin B6 metabolism SBML MML
ckl00760 Nicotinate and nicotinamide metabolism SBML MML
ckl00770 Pantothenate and CoA biosynthesis SBML MML
ckl00780 Biotin metabolism SBML MML
ckl00785 Lipoic acid metabolism SBML MML
ckl00790 Folate biosynthesis SBML MML
ckl00860 Porphyrin and chlorophyll metabolism SBML MML
ckl00900 Terpenoid backbone biosynthesis SBML MML
ckl00903 (Undocumented) SBML MML
ckl00910 Nitrogen metabolism SBML MML
ckl00920 Sulfur metabolism SBML MML
ckl00930 Caprolactam degradation SBML MML
ckl00940 (Undocumented) SBML MML
ckl00960 (Undocumented) SBML MML
ckl00970 Aminoacyl-tRNA biosynthesis SBML MML
ckl00982 (Undocumented) SBML MML
ckl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.