This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cma: Caldivirga maquilingensis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cma00010 Glycolysis / Gluconeogenesis SBML MML
cma00020 Citrate cycle (TCA cycle) SBML MML
cma00030 Pentose phosphate pathway SBML MML
cma00031 (Undocumented) SBML MML
cma00040 Pentose and glucuronate interconversions SBML MML
cma00051 Fructose and mannose metabolism SBML MML
cma00052 Galactose metabolism SBML MML
cma00061 Fatty acid biosynthesis SBML MML
cma00062 Fatty acid elongation in mitochondria SBML MML
cma00071 Fatty acid metabolism SBML MML
cma00100 (Undocumented) SBML MML
cma00120 (Undocumented) SBML MML
cma00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cma00150 Androgen and estrogen metabolism SBML MML
cma00220 (Undocumented) SBML MML
cma00230 Purine metabolism SBML MML
cma00240 Pyrimidine metabolism SBML MML
cma00251 (Undocumented) SBML MML
cma00252 (Undocumented) SBML MML
cma00260 Glycine, serine and threonine metabolism SBML MML
cma00271 (Undocumented) SBML MML
cma00272 (Undocumented) SBML MML
cma00280 Valine, leucine and isoleucine degradation SBML MML
cma00281 Geraniol degradation SBML MML
cma00290 Valine, leucine and isoleucine biosynthesis SBML MML
cma00300 Lysine biosynthesis SBML MML
cma00310 Lysine degradation SBML MML
cma00330 Arginine and proline metabolism SBML MML
cma00340 Histidine metabolism SBML MML
cma00350 Tyrosine metabolism SBML MML
cma00360 Phenylalanine metabolism SBML MML
cma00361 gamma-Hexachlorocyclohexane degradation SBML MML
cma00362 (Undocumented) SBML MML
cma00364 Fluorobenzoate degradation SBML MML
cma00380 Tryptophan metabolism SBML MML
cma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cma00401 Novobiocin biosynthesis SBML MML
cma00410 beta-Alanine metabolism SBML MML
cma00450 Selenoamino acid metabolism SBML MML
cma00460 (Undocumented) SBML MML
cma00480 Glutathione metabolism SBML MML
cma00500 Starch and sucrose metabolism SBML MML
cma00510 (Undocumented) SBML MML
cma00520 Amino sugar and nucleotide sugar metabolism SBML MML
cma00521 Streptomycin biosynthesis SBML MML
cma00523 Polyketide sugar unit biosynthesis SBML MML
cma00530 (Undocumented) SBML MML
cma00550 Peptidoglycan biosynthesis SBML MML
cma00561 Glycerolipid metabolism SBML MML
cma00562 Inositol phosphate metabolism SBML MML
cma00564 Glycerophospholipid metabolism SBML MML
cma00592 alpha-Linolenic acid metabolism SBML MML
cma00600 Sphingolipid metabolism SBML MML
cma00620 Pyruvate metabolism SBML MML
cma00624 1- and 2-Methylnaphthalene degradation SBML MML
cma00627 1,4-Dichlorobenzene degradation SBML MML
cma00630 Glyoxylate and dicarboxylate metabolism SBML MML
cma00631 1,2-Dichloroethane degradation SBML MML
cma00632 (Undocumented) SBML MML
cma00633 Trinitrotoluene degradation SBML MML
cma00640 Propanoate metabolism SBML MML
cma00641 3-Chloroacrylic acid degradation SBML MML
cma00650 Butanoate metabolism SBML MML
cma00660 C5-Branched dibasic acid metabolism SBML MML
cma00670 One carbon pool by folate SBML MML
cma00710 (Undocumented) SBML MML
cma00720 (Undocumented) SBML MML
cma00730 Thiamine metabolism SBML MML
cma00750 Vitamin B6 metabolism SBML MML
cma00760 Nicotinate and nicotinamide metabolism SBML MML
cma00770 Pantothenate and CoA biosynthesis SBML MML
cma00790 Folate biosynthesis SBML MML
cma00860 Porphyrin and chlorophyll metabolism SBML MML
cma00900 Terpenoid backbone biosynthesis SBML MML
cma00910 Nitrogen metabolism SBML MML
cma00920 Sulfur metabolism SBML MML
cma00930 Caprolactam degradation SBML MML
cma00970 Aminoacyl-tRNA biosynthesis SBML MML
cma00982 (Undocumented) SBML MML
cma00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.