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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cmi: Clavibacter michiganensis subsp. michiganensis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cmi00010 Glycolysis / Gluconeogenesis SBML MML
cmi00020 Citrate cycle (TCA cycle) SBML MML
cmi00030 Pentose phosphate pathway SBML MML
cmi00031 (Undocumented) SBML MML
cmi00040 Pentose and glucuronate interconversions SBML MML
cmi00051 Fructose and mannose metabolism SBML MML
cmi00052 Galactose metabolism SBML MML
cmi00053 Ascorbate and aldarate metabolism SBML MML
cmi00061 Fatty acid biosynthesis SBML MML
cmi00062 Fatty acid elongation in mitochondria SBML MML
cmi00071 Fatty acid metabolism SBML MML
cmi00100 (Undocumented) SBML MML
cmi00120 (Undocumented) SBML MML
cmi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cmi00220 (Undocumented) SBML MML
cmi00230 Purine metabolism SBML MML
cmi00240 Pyrimidine metabolism SBML MML
cmi00251 (Undocumented) SBML MML
cmi00252 (Undocumented) SBML MML
cmi00260 Glycine, serine and threonine metabolism SBML MML
cmi00271 (Undocumented) SBML MML
cmi00272 (Undocumented) SBML MML
cmi00280 Valine, leucine and isoleucine degradation SBML MML
cmi00281 Geraniol degradation SBML MML
cmi00290 Valine, leucine and isoleucine biosynthesis SBML MML
cmi00300 Lysine biosynthesis SBML MML
cmi00310 Lysine degradation SBML MML
cmi00311 Penicillin and cephalosporin biosynthesis SBML MML
cmi00330 Arginine and proline metabolism SBML MML
cmi00340 Histidine metabolism SBML MML
cmi00350 Tyrosine metabolism SBML MML
cmi00360 Phenylalanine metabolism SBML MML
cmi00361 gamma-Hexachlorocyclohexane degradation SBML MML
cmi00362 (Undocumented) SBML MML
cmi00364 Fluorobenzoate degradation SBML MML
cmi00380 Tryptophan metabolism SBML MML
cmi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cmi00401 Novobiocin biosynthesis SBML MML
cmi00410 beta-Alanine metabolism SBML MML
cmi00430 Taurine and hypotaurine metabolism SBML MML
cmi00450 Selenoamino acid metabolism SBML MML
cmi00460 (Undocumented) SBML MML
cmi00471 D-Glutamine and D-glutamate metabolism SBML MML
cmi00473 D-Alanine metabolism SBML MML
cmi00480 Glutathione metabolism SBML MML
cmi00500 Starch and sucrose metabolism SBML MML
cmi00510 (Undocumented) SBML MML
cmi00520 Amino sugar and nucleotide sugar metabolism SBML MML
cmi00521 Streptomycin biosynthesis SBML MML
cmi00523 Polyketide sugar unit biosynthesis SBML MML
cmi00530 (Undocumented) SBML MML
cmi00540 Lipopolysaccharide biosynthesis SBML MML
cmi00550 Peptidoglycan biosynthesis SBML MML
cmi00561 Glycerolipid metabolism SBML MML
cmi00562 Inositol phosphate metabolism SBML MML
cmi00564 Glycerophospholipid metabolism SBML MML
cmi00565 Ether lipid metabolism SBML MML
cmi00590 Arachidonic acid metabolism SBML MML
cmi00592 alpha-Linolenic acid metabolism SBML MML
cmi00600 Sphingolipid metabolism SBML MML
cmi00620 Pyruvate metabolism SBML MML
cmi00624 1- and 2-Methylnaphthalene degradation SBML MML
cmi00626 Naphthalene and anthracene degradation SBML MML
cmi00627 1,4-Dichlorobenzene degradation SBML MML
cmi00630 Glyoxylate and dicarboxylate metabolism SBML MML
cmi00631 1,2-Dichloroethane degradation SBML MML
cmi00632 (Undocumented) SBML MML
cmi00640 Propanoate metabolism SBML MML
cmi00641 3-Chloroacrylic acid degradation SBML MML
cmi00643 Styrene degradation SBML MML
cmi00650 Butanoate metabolism SBML MML
cmi00660 C5-Branched dibasic acid metabolism SBML MML
cmi00670 One carbon pool by folate SBML MML
cmi00680 Methane metabolism SBML MML
cmi00710 (Undocumented) SBML MML
cmi00720 (Undocumented) SBML MML
cmi00730 Thiamine metabolism SBML MML
cmi00740 Riboflavin metabolism SBML MML
cmi00750 Vitamin B6 metabolism SBML MML
cmi00760 Nicotinate and nicotinamide metabolism SBML MML
cmi00770 Pantothenate and CoA biosynthesis SBML MML
cmi00780 Biotin metabolism SBML MML
cmi00790 Folate biosynthesis SBML MML
cmi00791 Atrazine degradation SBML MML
cmi00860 Porphyrin and chlorophyll metabolism SBML MML
cmi00900 Terpenoid backbone biosynthesis SBML MML
cmi00903 (Undocumented) SBML MML
cmi00910 Nitrogen metabolism SBML MML
cmi00920 Sulfur metabolism SBML MML
cmi00930 Caprolactam degradation SBML MML
cmi00940 (Undocumented) SBML MML
cmi00941 (Undocumented) SBML MML
cmi00950 (Undocumented) SBML MML
cmi00960 (Undocumented) SBML MML
cmi00970 Aminoacyl-tRNA biosynthesis SBML MML
cmi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cmi00982 (Undocumented) SBML MML
cmi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.