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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cnb: Cryptococcus neoformans B-3501A

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cnb00010 Glycolysis / Gluconeogenesis SBML MML
cnb00020 Citrate cycle (TCA cycle) SBML MML
cnb00030 Pentose phosphate pathway SBML MML
cnb00031 (Undocumented) SBML MML
cnb00040 Pentose and glucuronate interconversions SBML MML
cnb00051 Fructose and mannose metabolism SBML MML
cnb00052 Galactose metabolism SBML MML
cnb00053 Ascorbate and aldarate metabolism SBML MML
cnb00061 Fatty acid biosynthesis SBML MML
cnb00062 Fatty acid elongation in mitochondria SBML MML
cnb00071 Fatty acid metabolism SBML MML
cnb00072 Synthesis and degradation of ketone bodies SBML MML
cnb00100 (Undocumented) SBML MML
cnb00120 (Undocumented) SBML MML
cnb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cnb00150 Androgen and estrogen metabolism SBML MML
cnb00220 (Undocumented) SBML MML
cnb00230 Purine metabolism SBML MML
cnb00240 Pyrimidine metabolism SBML MML
cnb00251 (Undocumented) SBML MML
cnb00252 (Undocumented) SBML MML
cnb00260 Glycine, serine and threonine metabolism SBML MML
cnb00271 (Undocumented) SBML MML
cnb00272 (Undocumented) SBML MML
cnb00280 Valine, leucine and isoleucine degradation SBML MML
cnb00281 Geraniol degradation SBML MML
cnb00290 Valine, leucine and isoleucine biosynthesis SBML MML
cnb00300 Lysine biosynthesis SBML MML
cnb00310 Lysine degradation SBML MML
cnb00330 Arginine and proline metabolism SBML MML
cnb00340 Histidine metabolism SBML MML
cnb00350 Tyrosine metabolism SBML MML
cnb00360 Phenylalanine metabolism SBML MML
cnb00361 gamma-Hexachlorocyclohexane degradation SBML MML
cnb00362 (Undocumented) SBML MML
cnb00364 Fluorobenzoate degradation SBML MML
cnb00380 Tryptophan metabolism SBML MML
cnb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cnb00401 Novobiocin biosynthesis SBML MML
cnb00410 beta-Alanine metabolism SBML MML
cnb00430 Taurine and hypotaurine metabolism SBML MML
cnb00440 Phosphonate and phosphinate metabolism SBML MML
cnb00450 Selenoamino acid metabolism SBML MML
cnb00460 (Undocumented) SBML MML
cnb00480 Glutathione metabolism SBML MML
cnb00500 Starch and sucrose metabolism SBML MML
cnb00510 (Undocumented) SBML MML
cnb00520 Amino sugar and nucleotide sugar metabolism SBML MML
cnb00521 Streptomycin biosynthesis SBML MML
cnb00530 (Undocumented) SBML MML
cnb00550 Peptidoglycan biosynthesis SBML MML
cnb00561 Glycerolipid metabolism SBML MML
cnb00562 Inositol phosphate metabolism SBML MML
cnb00564 Glycerophospholipid metabolism SBML MML
cnb00565 Ether lipid metabolism SBML MML
cnb00590 Arachidonic acid metabolism SBML MML
cnb00592 alpha-Linolenic acid metabolism SBML MML
cnb00600 Sphingolipid metabolism SBML MML
cnb00620 Pyruvate metabolism SBML MML
cnb00624 1- and 2-Methylnaphthalene degradation SBML MML
cnb00626 Naphthalene and anthracene degradation SBML MML
cnb00627 1,4-Dichlorobenzene degradation SBML MML
cnb00630 Glyoxylate and dicarboxylate metabolism SBML MML
cnb00632 (Undocumented) SBML MML
cnb00640 Propanoate metabolism SBML MML
cnb00641 3-Chloroacrylic acid degradation SBML MML
cnb00642 Ethylbenzene degradation SBML MML
cnb00650 Butanoate metabolism SBML MML
cnb00660 C5-Branched dibasic acid metabolism SBML MML
cnb00670 One carbon pool by folate SBML MML
cnb00680 Methane metabolism SBML MML
cnb00710 (Undocumented) SBML MML
cnb00720 (Undocumented) SBML MML
cnb00730 Thiamine metabolism SBML MML
cnb00740 Riboflavin metabolism SBML MML
cnb00750 Vitamin B6 metabolism SBML MML
cnb00760 Nicotinate and nicotinamide metabolism SBML MML
cnb00770 Pantothenate and CoA biosynthesis SBML MML
cnb00780 Biotin metabolism SBML MML
cnb00790 Folate biosynthesis SBML MML
cnb00791 Atrazine degradation SBML MML
cnb00860 Porphyrin and chlorophyll metabolism SBML MML
cnb00900 Terpenoid backbone biosynthesis SBML MML
cnb00903 (Undocumented) SBML MML
cnb00910 Nitrogen metabolism SBML MML
cnb00920 Sulfur metabolism SBML MML
cnb00930 Caprolactam degradation SBML MML
cnb00940 (Undocumented) SBML MML
cnb00950 (Undocumented) SBML MML
cnb00960 (Undocumented) SBML MML
cnb00970 Aminoacyl-tRNA biosynthesis SBML MML
cnb00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cnb00982 (Undocumented) SBML MML
cnb00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.