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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cph: Chlorobium phaeobacteroides DSM 266

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cph00010 Glycolysis / Gluconeogenesis SBML MML
cph00020 Citrate cycle (TCA cycle) SBML MML
cph00030 Pentose phosphate pathway SBML MML
cph00031 (Undocumented) SBML MML
cph00040 Pentose and glucuronate interconversions SBML MML
cph00051 Fructose and mannose metabolism SBML MML
cph00052 Galactose metabolism SBML MML
cph00061 Fatty acid biosynthesis SBML MML
cph00100 (Undocumented) SBML MML
cph00120 (Undocumented) SBML MML
cph00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cph00220 (Undocumented) SBML MML
cph00230 Purine metabolism SBML MML
cph00240 Pyrimidine metabolism SBML MML
cph00251 (Undocumented) SBML MML
cph00252 (Undocumented) SBML MML
cph00260 Glycine, serine and threonine metabolism SBML MML
cph00271 (Undocumented) SBML MML
cph00272 (Undocumented) SBML MML
cph00280 Valine, leucine and isoleucine degradation SBML MML
cph00290 Valine, leucine and isoleucine biosynthesis SBML MML
cph00300 Lysine biosynthesis SBML MML
cph00330 Arginine and proline metabolism SBML MML
cph00340 Histidine metabolism SBML MML
cph00350 Tyrosine metabolism SBML MML
cph00360 Phenylalanine metabolism SBML MML
cph00361 gamma-Hexachlorocyclohexane degradation SBML MML
cph00380 Tryptophan metabolism SBML MML
cph00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cph00401 Novobiocin biosynthesis SBML MML
cph00410 beta-Alanine metabolism SBML MML
cph00450 Selenoamino acid metabolism SBML MML
cph00471 D-Glutamine and D-glutamate metabolism SBML MML
cph00473 D-Alanine metabolism SBML MML
cph00480 Glutathione metabolism SBML MML
cph00500 Starch and sucrose metabolism SBML MML
cph00520 Amino sugar and nucleotide sugar metabolism SBML MML
cph00521 Streptomycin biosynthesis SBML MML
cph00523 Polyketide sugar unit biosynthesis SBML MML
cph00530 (Undocumented) SBML MML
cph00540 Lipopolysaccharide biosynthesis SBML MML
cph00550 Peptidoglycan biosynthesis SBML MML
cph00561 Glycerolipid metabolism SBML MML
cph00562 Inositol phosphate metabolism SBML MML
cph00564 Glycerophospholipid metabolism SBML MML
cph00620 Pyruvate metabolism SBML MML
cph00625 (Undocumented) SBML MML
cph00630 Glyoxylate and dicarboxylate metabolism SBML MML
cph00632 (Undocumented) SBML MML
cph00633 Trinitrotoluene degradation SBML MML
cph00640 Propanoate metabolism SBML MML
cph00650 Butanoate metabolism SBML MML
cph00660 C5-Branched dibasic acid metabolism SBML MML
cph00670 One carbon pool by folate SBML MML
cph00680 Methane metabolism SBML MML
cph00710 (Undocumented) SBML MML
cph00720 (Undocumented) SBML MML
cph00730 Thiamine metabolism SBML MML
cph00740 Riboflavin metabolism SBML MML
cph00750 Vitamin B6 metabolism SBML MML
cph00760 Nicotinate and nicotinamide metabolism SBML MML
cph00770 Pantothenate and CoA biosynthesis SBML MML
cph00780 Biotin metabolism SBML MML
cph00785 Lipoic acid metabolism SBML MML
cph00790 Folate biosynthesis SBML MML
cph00791 Atrazine degradation SBML MML
cph00860 Porphyrin and chlorophyll metabolism SBML MML
cph00900 Terpenoid backbone biosynthesis SBML MML
cph00906 Carotenoid biosynthesis SBML MML
cph00910 Nitrogen metabolism SBML MML
cph00920 Sulfur metabolism SBML MML
cph00941 (Undocumented) SBML MML
cph00970 Aminoacyl-tRNA biosynthesis SBML MML
cph00982 (Undocumented) SBML MML
cph00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.