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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cps: Colwellia psychrerythraea

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cps00010 Glycolysis / Gluconeogenesis SBML MML
cps00020 Citrate cycle (TCA cycle) SBML MML
cps00030 Pentose phosphate pathway SBML MML
cps00031 (Undocumented) SBML MML
cps00040 Pentose and glucuronate interconversions SBML MML
cps00051 Fructose and mannose metabolism SBML MML
cps00052 Galactose metabolism SBML MML
cps00053 Ascorbate and aldarate metabolism SBML MML
cps00061 Fatty acid biosynthesis SBML MML
cps00062 Fatty acid elongation in mitochondria SBML MML
cps00071 Fatty acid metabolism SBML MML
cps00072 Synthesis and degradation of ketone bodies SBML MML
cps00100 (Undocumented) SBML MML
cps00120 (Undocumented) SBML MML
cps00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cps00150 Androgen and estrogen metabolism SBML MML
cps00220 (Undocumented) SBML MML
cps00230 Purine metabolism SBML MML
cps00240 Pyrimidine metabolism SBML MML
cps00251 (Undocumented) SBML MML
cps00252 (Undocumented) SBML MML
cps00260 Glycine, serine and threonine metabolism SBML MML
cps00271 (Undocumented) SBML MML
cps00272 (Undocumented) SBML MML
cps00280 Valine, leucine and isoleucine degradation SBML MML
cps00281 Geraniol degradation SBML MML
cps00290 Valine, leucine and isoleucine biosynthesis SBML MML
cps00300 Lysine biosynthesis SBML MML
cps00310 Lysine degradation SBML MML
cps00311 Penicillin and cephalosporin biosynthesis SBML MML
cps00330 Arginine and proline metabolism SBML MML
cps00340 Histidine metabolism SBML MML
cps00350 Tyrosine metabolism SBML MML
cps00360 Phenylalanine metabolism SBML MML
cps00361 gamma-Hexachlorocyclohexane degradation SBML MML
cps00362 (Undocumented) SBML MML
cps00364 Fluorobenzoate degradation SBML MML
cps00380 Tryptophan metabolism SBML MML
cps00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cps00401 Novobiocin biosynthesis SBML MML
cps00410 beta-Alanine metabolism SBML MML
cps00430 Taurine and hypotaurine metabolism SBML MML
cps00440 Phosphonate and phosphinate metabolism SBML MML
cps00450 Selenoamino acid metabolism SBML MML
cps00460 (Undocumented) SBML MML
cps00471 D-Glutamine and D-glutamate metabolism SBML MML
cps00473 D-Alanine metabolism SBML MML
cps00480 Glutathione metabolism SBML MML
cps00500 Starch and sucrose metabolism SBML MML
cps00520 Amino sugar and nucleotide sugar metabolism SBML MML
cps00521 Streptomycin biosynthesis SBML MML
cps00530 (Undocumented) SBML MML
cps00540 Lipopolysaccharide biosynthesis SBML MML
cps00550 Peptidoglycan biosynthesis SBML MML
cps00561 Glycerolipid metabolism SBML MML
cps00562 Inositol phosphate metabolism SBML MML
cps00564 Glycerophospholipid metabolism SBML MML
cps00590 Arachidonic acid metabolism SBML MML
cps00592 alpha-Linolenic acid metabolism SBML MML
cps00600 Sphingolipid metabolism SBML MML
cps00620 Pyruvate metabolism SBML MML
cps00624 1- and 2-Methylnaphthalene degradation SBML MML
cps00626 Naphthalene and anthracene degradation SBML MML
cps00627 1,4-Dichlorobenzene degradation SBML MML
cps00630 Glyoxylate and dicarboxylate metabolism SBML MML
cps00631 1,2-Dichloroethane degradation SBML MML
cps00632 (Undocumented) SBML MML
cps00633 Trinitrotoluene degradation SBML MML
cps00640 Propanoate metabolism SBML MML
cps00641 3-Chloroacrylic acid degradation SBML MML
cps00642 Ethylbenzene degradation SBML MML
cps00650 Butanoate metabolism SBML MML
cps00660 C5-Branched dibasic acid metabolism SBML MML
cps00670 One carbon pool by folate SBML MML
cps00680 Methane metabolism SBML MML
cps00710 (Undocumented) SBML MML
cps00720 (Undocumented) SBML MML
cps00730 Thiamine metabolism SBML MML
cps00740 Riboflavin metabolism SBML MML
cps00750 Vitamin B6 metabolism SBML MML
cps00760 Nicotinate and nicotinamide metabolism SBML MML
cps00770 Pantothenate and CoA biosynthesis SBML MML
cps00780 Biotin metabolism SBML MML
cps00785 Lipoic acid metabolism SBML MML
cps00790 Folate biosynthesis SBML MML
cps00860 Porphyrin and chlorophyll metabolism SBML MML
cps00900 Terpenoid backbone biosynthesis SBML MML
cps00903 (Undocumented) SBML MML
cps00910 Nitrogen metabolism SBML MML
cps00920 Sulfur metabolism SBML MML
cps00930 Caprolactam degradation SBML MML
cps00950 (Undocumented) SBML MML
cps00960 (Undocumented) SBML MML
cps00970 Aminoacyl-tRNA biosynthesis SBML MML
cps00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cps00982 (Undocumented) SBML MML
cps00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.