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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism csa: Chromohalobacter salexigens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
csa00010 Glycolysis / Gluconeogenesis SBML MML
csa00020 Citrate cycle (TCA cycle) SBML MML
csa00030 Pentose phosphate pathway SBML MML
csa00031 (Undocumented) SBML MML
csa00040 Pentose and glucuronate interconversions SBML MML
csa00051 Fructose and mannose metabolism SBML MML
csa00052 Galactose metabolism SBML MML
csa00053 Ascorbate and aldarate metabolism SBML MML
csa00061 Fatty acid biosynthesis SBML MML
csa00062 Fatty acid elongation in mitochondria SBML MML
csa00071 Fatty acid metabolism SBML MML
csa00072 Synthesis and degradation of ketone bodies SBML MML
csa00100 (Undocumented) SBML MML
csa00120 (Undocumented) SBML MML
csa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
csa00220 (Undocumented) SBML MML
csa00230 Purine metabolism SBML MML
csa00240 Pyrimidine metabolism SBML MML
csa00251 (Undocumented) SBML MML
csa00252 (Undocumented) SBML MML
csa00260 Glycine, serine and threonine metabolism SBML MML
csa00271 (Undocumented) SBML MML
csa00272 (Undocumented) SBML MML
csa00280 Valine, leucine and isoleucine degradation SBML MML
csa00281 Geraniol degradation SBML MML
csa00290 Valine, leucine and isoleucine biosynthesis SBML MML
csa00300 Lysine biosynthesis SBML MML
csa00310 Lysine degradation SBML MML
csa00330 Arginine and proline metabolism SBML MML
csa00340 Histidine metabolism SBML MML
csa00350 Tyrosine metabolism SBML MML
csa00360 Phenylalanine metabolism SBML MML
csa00361 gamma-Hexachlorocyclohexane degradation SBML MML
csa00362 (Undocumented) SBML MML
csa00364 Fluorobenzoate degradation SBML MML
csa00380 Tryptophan metabolism SBML MML
csa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
csa00401 Novobiocin biosynthesis SBML MML
csa00410 beta-Alanine metabolism SBML MML
csa00430 Taurine and hypotaurine metabolism SBML MML
csa00450 Selenoamino acid metabolism SBML MML
csa00460 (Undocumented) SBML MML
csa00471 D-Glutamine and D-glutamate metabolism SBML MML
csa00473 D-Alanine metabolism SBML MML
csa00480 Glutathione metabolism SBML MML
csa00500 Starch and sucrose metabolism SBML MML
csa00520 Amino sugar and nucleotide sugar metabolism SBML MML
csa00521 Streptomycin biosynthesis SBML MML
csa00530 (Undocumented) SBML MML
csa00540 Lipopolysaccharide biosynthesis SBML MML
csa00550 Peptidoglycan biosynthesis SBML MML
csa00561 Glycerolipid metabolism SBML MML
csa00562 Inositol phosphate metabolism SBML MML
csa00564 Glycerophospholipid metabolism SBML MML
csa00590 Arachidonic acid metabolism SBML MML
csa00592 alpha-Linolenic acid metabolism SBML MML
csa00620 Pyruvate metabolism SBML MML
csa00622 Toluene and xylene degradation SBML MML
csa00623 2,4-Dichlorobenzoate degradation SBML MML
csa00624 1- and 2-Methylnaphthalene degradation SBML MML
csa00627 1,4-Dichlorobenzene degradation SBML MML
csa00630 Glyoxylate and dicarboxylate metabolism SBML MML
csa00631 1,2-Dichloroethane degradation SBML MML
csa00632 (Undocumented) SBML MML
csa00633 Trinitrotoluene degradation SBML MML
csa00640 Propanoate metabolism SBML MML
csa00641 3-Chloroacrylic acid degradation SBML MML
csa00650 Butanoate metabolism SBML MML
csa00660 C5-Branched dibasic acid metabolism SBML MML
csa00670 One carbon pool by folate SBML MML
csa00680 Methane metabolism SBML MML
csa00710 (Undocumented) SBML MML
csa00720 (Undocumented) SBML MML
csa00730 Thiamine metabolism SBML MML
csa00740 Riboflavin metabolism SBML MML
csa00750 Vitamin B6 metabolism SBML MML
csa00760 Nicotinate and nicotinamide metabolism SBML MML
csa00770 Pantothenate and CoA biosynthesis SBML MML
csa00780 Biotin metabolism SBML MML
csa00785 Lipoic acid metabolism SBML MML
csa00790 Folate biosynthesis SBML MML
csa00860 Porphyrin and chlorophyll metabolism SBML MML
csa00900 Terpenoid backbone biosynthesis SBML MML
csa00903 (Undocumented) SBML MML
csa00910 Nitrogen metabolism SBML MML
csa00920 Sulfur metabolism SBML MML
csa00930 Caprolactam degradation SBML MML
csa00940 (Undocumented) SBML MML
csa00970 Aminoacyl-tRNA biosynthesis SBML MML
csa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
csa00982 (Undocumented) SBML MML
csa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.