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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism cti: Cupriavidus taiwanensis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
cti00010 Glycolysis / Gluconeogenesis SBML MML
cti00020 Citrate cycle (TCA cycle) SBML MML
cti00030 Pentose phosphate pathway SBML MML
cti00051 Fructose and mannose metabolism SBML MML
cti00053 Ascorbate and aldarate metabolism SBML MML
cti00061 Fatty acid biosynthesis SBML MML
cti00062 Fatty acid elongation in mitochondria SBML MML
cti00071 Fatty acid metabolism SBML MML
cti00072 Synthesis and degradation of ketone bodies SBML MML
cti00100 (Undocumented) SBML MML
cti00120 (Undocumented) SBML MML
cti00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
cti00220 (Undocumented) SBML MML
cti00230 Purine metabolism SBML MML
cti00240 Pyrimidine metabolism SBML MML
cti00251 (Undocumented) SBML MML
cti00252 (Undocumented) SBML MML
cti00260 Glycine, serine and threonine metabolism SBML MML
cti00271 (Undocumented) SBML MML
cti00280 Valine, leucine and isoleucine degradation SBML MML
cti00281 Geraniol degradation SBML MML
cti00290 Valine, leucine and isoleucine biosynthesis SBML MML
cti00300 Lysine biosynthesis SBML MML
cti00310 Lysine degradation SBML MML
cti00330 Arginine and proline metabolism SBML MML
cti00340 Histidine metabolism SBML MML
cti00350 Tyrosine metabolism SBML MML
cti00360 Phenylalanine metabolism SBML MML
cti00361 gamma-Hexachlorocyclohexane degradation SBML MML
cti00362 (Undocumented) SBML MML
cti00364 Fluorobenzoate degradation SBML MML
cti00380 Tryptophan metabolism SBML MML
cti00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
cti00410 beta-Alanine metabolism SBML MML
cti00440 Phosphonate and phosphinate metabolism SBML MML
cti00450 Selenoamino acid metabolism SBML MML
cti00480 Glutathione metabolism SBML MML
cti00500 Starch and sucrose metabolism SBML MML
cti00520 Amino sugar and nucleotide sugar metabolism SBML MML
cti00530 (Undocumented) SBML MML
cti00561 Glycerolipid metabolism SBML MML
cti00564 Glycerophospholipid metabolism SBML MML
cti00565 Ether lipid metabolism SBML MML
cti00590 Arachidonic acid metabolism SBML MML
cti00592 alpha-Linolenic acid metabolism SBML MML
cti00620 Pyruvate metabolism SBML MML
cti00621 (Undocumented) SBML MML
cti00624 1- and 2-Methylnaphthalene degradation SBML MML
cti00626 Naphthalene and anthracene degradation SBML MML
cti00627 1,4-Dichlorobenzene degradation SBML MML
cti00630 Glyoxylate and dicarboxylate metabolism SBML MML
cti00631 1,2-Dichloroethane degradation SBML MML
cti00632 (Undocumented) SBML MML
cti00640 Propanoate metabolism SBML MML
cti00641 3-Chloroacrylic acid degradation SBML MML
cti00642 Ethylbenzene degradation SBML MML
cti00643 Styrene degradation SBML MML
cti00650 Butanoate metabolism SBML MML
cti00660 C5-Branched dibasic acid metabolism SBML MML
cti00670 One carbon pool by folate SBML MML
cti00680 Methane metabolism SBML MML
cti00710 (Undocumented) SBML MML
cti00720 (Undocumented) SBML MML
cti00730 Thiamine metabolism SBML MML
cti00740 Riboflavin metabolism SBML MML
cti00760 Nicotinate and nicotinamide metabolism SBML MML
cti00770 Pantothenate and CoA biosynthesis SBML MML
cti00780 Biotin metabolism SBML MML
cti00790 Folate biosynthesis SBML MML
cti00791 Atrazine degradation SBML MML
cti00903 (Undocumented) SBML MML
cti00910 Nitrogen metabolism SBML MML
cti00920 Sulfur metabolism SBML MML
cti00930 Caprolactam degradation SBML MML
cti00960 (Undocumented) SBML MML
cti00970 Aminoacyl-tRNA biosynthesis SBML MML
cti00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
cti00982 (Undocumented) SBML MML
cti00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.