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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ctr: Chlamydia trachomatis D/UW-3/CX (serovar D)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ctr00010 Glycolysis / Gluconeogenesis SBML MML
ctr00020 Citrate cycle (TCA cycle) SBML MML
ctr00030 Pentose phosphate pathway SBML MML
ctr00051 Fructose and mannose metabolism SBML MML
ctr00061 Fatty acid biosynthesis SBML MML
ctr00100 (Undocumented) SBML MML
ctr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ctr00230 Purine metabolism SBML MML
ctr00240 Pyrimidine metabolism SBML MML
ctr00251 (Undocumented) SBML MML
ctr00252 (Undocumented) SBML MML
ctr00260 Glycine, serine and threonine metabolism SBML MML
ctr00271 (Undocumented) SBML MML
ctr00272 (Undocumented) SBML MML
ctr00280 Valine, leucine and isoleucine degradation SBML MML
ctr00290 Valine, leucine and isoleucine biosynthesis SBML MML
ctr00300 Lysine biosynthesis SBML MML
ctr00310 Lysine degradation SBML MML
ctr00330 Arginine and proline metabolism SBML MML
ctr00340 Histidine metabolism SBML MML
ctr00350 Tyrosine metabolism SBML MML
ctr00380 Tryptophan metabolism SBML MML
ctr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ctr00450 Selenoamino acid metabolism SBML MML
ctr00471 D-Glutamine and D-glutamate metabolism SBML MML
ctr00500 Starch and sucrose metabolism SBML MML
ctr00530 (Undocumented) SBML MML
ctr00540 Lipopolysaccharide biosynthesis SBML MML
ctr00550 Peptidoglycan biosynthesis SBML MML
ctr00561 Glycerolipid metabolism SBML MML
ctr00564 Glycerophospholipid metabolism SBML MML
ctr00620 Pyruvate metabolism SBML MML
ctr00630 Glyoxylate and dicarboxylate metabolism SBML MML
ctr00632 (Undocumented) SBML MML
ctr00640 Propanoate metabolism SBML MML
ctr00650 Butanoate metabolism SBML MML
ctr00670 One carbon pool by folate SBML MML
ctr00710 (Undocumented) SBML MML
ctr00720 (Undocumented) SBML MML
ctr00730 Thiamine metabolism SBML MML
ctr00740 Riboflavin metabolism SBML MML
ctr00760 Nicotinate and nicotinamide metabolism SBML MML
ctr00770 Pantothenate and CoA biosynthesis SBML MML
ctr00780 Biotin metabolism SBML MML
ctr00785 Lipoic acid metabolism SBML MML
ctr00790 Folate biosynthesis SBML MML
ctr00860 Porphyrin and chlorophyll metabolism SBML MML
ctr00900 Terpenoid backbone biosynthesis SBML MML
ctr00920 Sulfur metabolism SBML MML
ctr00970 Aminoacyl-tRNA biosynthesis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.