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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dde: Desulfovibrio desulfuricans G20

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dde00010 Glycolysis / Gluconeogenesis SBML MML
dde00020 Citrate cycle (TCA cycle) SBML MML
dde00030 Pentose phosphate pathway SBML MML
dde00031 (Undocumented) SBML MML
dde00040 Pentose and glucuronate interconversions SBML MML
dde00051 Fructose and mannose metabolism SBML MML
dde00052 Galactose metabolism SBML MML
dde00053 Ascorbate and aldarate metabolism SBML MML
dde00061 Fatty acid biosynthesis SBML MML
dde00071 Fatty acid metabolism SBML MML
dde00100 (Undocumented) SBML MML
dde00120 (Undocumented) SBML MML
dde00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dde00220 (Undocumented) SBML MML
dde00230 Purine metabolism SBML MML
dde00240 Pyrimidine metabolism SBML MML
dde00251 (Undocumented) SBML MML
dde00252 (Undocumented) SBML MML
dde00260 Glycine, serine and threonine metabolism SBML MML
dde00271 (Undocumented) SBML MML
dde00272 (Undocumented) SBML MML
dde00280 Valine, leucine and isoleucine degradation SBML MML
dde00290 Valine, leucine and isoleucine biosynthesis SBML MML
dde00300 Lysine biosynthesis SBML MML
dde00310 Lysine degradation SBML MML
dde00330 Arginine and proline metabolism SBML MML
dde00340 Histidine metabolism SBML MML
dde00350 Tyrosine metabolism SBML MML
dde00360 Phenylalanine metabolism SBML MML
dde00361 gamma-Hexachlorocyclohexane degradation SBML MML
dde00362 (Undocumented) SBML MML
dde00363 Bisphenol A degradation SBML MML
dde00380 Tryptophan metabolism SBML MML
dde00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dde00401 Novobiocin biosynthesis SBML MML
dde00410 beta-Alanine metabolism SBML MML
dde00430 Taurine and hypotaurine metabolism SBML MML
dde00450 Selenoamino acid metabolism SBML MML
dde00460 (Undocumented) SBML MML
dde00471 D-Glutamine and D-glutamate metabolism SBML MML
dde00473 D-Alanine metabolism SBML MML
dde00480 Glutathione metabolism SBML MML
dde00500 Starch and sucrose metabolism SBML MML
dde00520 Amino sugar and nucleotide sugar metabolism SBML MML
dde00521 Streptomycin biosynthesis SBML MML
dde00523 Polyketide sugar unit biosynthesis SBML MML
dde00530 (Undocumented) SBML MML
dde00540 Lipopolysaccharide biosynthesis SBML MML
dde00550 Peptidoglycan biosynthesis SBML MML
dde00561 Glycerolipid metabolism SBML MML
dde00562 Inositol phosphate metabolism SBML MML
dde00564 Glycerophospholipid metabolism SBML MML
dde00620 Pyruvate metabolism SBML MML
dde00622 Toluene and xylene degradation SBML MML
dde00624 1- and 2-Methylnaphthalene degradation SBML MML
dde00626 Naphthalene and anthracene degradation SBML MML
dde00630 Glyoxylate and dicarboxylate metabolism SBML MML
dde00632 (Undocumented) SBML MML
dde00633 Trinitrotoluene degradation SBML MML
dde00640 Propanoate metabolism SBML MML
dde00641 3-Chloroacrylic acid degradation SBML MML
dde00650 Butanoate metabolism SBML MML
dde00660 C5-Branched dibasic acid metabolism SBML MML
dde00670 One carbon pool by folate SBML MML
dde00680 Methane metabolism SBML MML
dde00710 (Undocumented) SBML MML
dde00720 (Undocumented) SBML MML
dde00730 Thiamine metabolism SBML MML
dde00740 Riboflavin metabolism SBML MML
dde00750 Vitamin B6 metabolism SBML MML
dde00760 Nicotinate and nicotinamide metabolism SBML MML
dde00770 Pantothenate and CoA biosynthesis SBML MML
dde00780 Biotin metabolism SBML MML
dde00785 Lipoic acid metabolism SBML MML
dde00790 Folate biosynthesis SBML MML
dde00791 Atrazine degradation SBML MML
dde00860 Porphyrin and chlorophyll metabolism SBML MML
dde00900 Terpenoid backbone biosynthesis SBML MML
dde00903 (Undocumented) SBML MML
dde00910 Nitrogen metabolism SBML MML
dde00920 Sulfur metabolism SBML MML
dde00940 (Undocumented) SBML MML
dde00950 (Undocumented) SBML MML
dde00970 Aminoacyl-tRNA biosynthesis SBML MML
dde00982 (Undocumented) SBML MML
dde00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.