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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism deh: Dehalococcoides sp. CBDB1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
deh00010 Glycolysis / Gluconeogenesis SBML MML
deh00020 Citrate cycle (TCA cycle) SBML MML
deh00030 Pentose phosphate pathway SBML MML
deh00040 Pentose and glucuronate interconversions SBML MML
deh00051 Fructose and mannose metabolism SBML MML
deh00052 Galactose metabolism SBML MML
deh00061 Fatty acid biosynthesis SBML MML
deh00100 (Undocumented) SBML MML
deh00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
deh00220 (Undocumented) SBML MML
deh00230 Purine metabolism SBML MML
deh00240 Pyrimidine metabolism SBML MML
deh00251 (Undocumented) SBML MML
deh00252 (Undocumented) SBML MML
deh00260 Glycine, serine and threonine metabolism SBML MML
deh00271 (Undocumented) SBML MML
deh00272 (Undocumented) SBML MML
deh00280 Valine, leucine and isoleucine degradation SBML MML
deh00281 Geraniol degradation SBML MML
deh00290 Valine, leucine and isoleucine biosynthesis SBML MML
deh00300 Lysine biosynthesis SBML MML
deh00330 Arginine and proline metabolism SBML MML
deh00340 Histidine metabolism SBML MML
deh00350 Tyrosine metabolism SBML MML
deh00360 Phenylalanine metabolism SBML MML
deh00380 Tryptophan metabolism SBML MML
deh00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
deh00401 Novobiocin biosynthesis SBML MML
deh00410 beta-Alanine metabolism SBML MML
deh00450 Selenoamino acid metabolism SBML MML
deh00500 Starch and sucrose metabolism SBML MML
deh00521 Streptomycin biosynthesis SBML MML
deh00550 Peptidoglycan biosynthesis SBML MML
deh00564 Glycerophospholipid metabolism SBML MML
deh00620 Pyruvate metabolism SBML MML
deh00624 1- and 2-Methylnaphthalene degradation SBML MML
deh00626 Naphthalene and anthracene degradation SBML MML
deh00630 Glyoxylate and dicarboxylate metabolism SBML MML
deh00640 Propanoate metabolism SBML MML
deh00650 Butanoate metabolism SBML MML
deh00670 One carbon pool by folate SBML MML
deh00680 Methane metabolism SBML MML
deh00710 (Undocumented) SBML MML
deh00720 (Undocumented) SBML MML
deh00730 Thiamine metabolism SBML MML
deh00740 Riboflavin metabolism SBML MML
deh00750 Vitamin B6 metabolism SBML MML
deh00760 Nicotinate and nicotinamide metabolism SBML MML
deh00770 Pantothenate and CoA biosynthesis SBML MML
deh00780 Biotin metabolism SBML MML
deh00790 Folate biosynthesis SBML MML
deh00860 Porphyrin and chlorophyll metabolism SBML MML
deh00900 Terpenoid backbone biosynthesis SBML MML
deh00910 Nitrogen metabolism SBML MML
deh00920 Sulfur metabolism SBML MML
deh00941 (Undocumented) SBML MML
deh00970 Aminoacyl-tRNA biosynthesis SBML MML
deh00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.