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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism dfru: Fugu rubripes (Japanese puffer fish)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
dfru00010 Glycolysis / Gluconeogenesis SBML MML
dfru00020 Citrate cycle (TCA cycle) SBML MML
dfru00030 Pentose phosphate pathway SBML MML
dfru00031 (Undocumented) SBML MML
dfru00040 Pentose and glucuronate interconversions SBML MML
dfru00051 Fructose and mannose metabolism SBML MML
dfru00052 Galactose metabolism SBML MML
dfru00053 Ascorbate and aldarate metabolism SBML MML
dfru00061 Fatty acid biosynthesis SBML MML
dfru00062 Fatty acid elongation in mitochondria SBML MML
dfru00071 Fatty acid metabolism SBML MML
dfru00072 Synthesis and degradation of ketone bodies SBML MML
dfru00100 (Undocumented) SBML MML
dfru00120 (Undocumented) SBML MML
dfru00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
dfru00140 (Undocumented) SBML MML
dfru00150 Androgen and estrogen metabolism SBML MML
dfru00220 (Undocumented) SBML MML
dfru00230 Purine metabolism SBML MML
dfru00240 Pyrimidine metabolism SBML MML
dfru00251 (Undocumented) SBML MML
dfru00252 (Undocumented) SBML MML
dfru00260 Glycine, serine and threonine metabolism SBML MML
dfru00271 (Undocumented) SBML MML
dfru00272 (Undocumented) SBML MML
dfru00280 Valine, leucine and isoleucine degradation SBML MML
dfru00281 Geraniol degradation SBML MML
dfru00290 Valine, leucine and isoleucine biosynthesis SBML MML
dfru00300 Lysine biosynthesis SBML MML
dfru00310 Lysine degradation SBML MML
dfru00330 Arginine and proline metabolism SBML MML
dfru00340 Histidine metabolism SBML MML
dfru00350 Tyrosine metabolism SBML MML
dfru00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
dfru00360 Phenylalanine metabolism SBML MML
dfru00361 gamma-Hexachlorocyclohexane degradation SBML MML
dfru00362 (Undocumented) SBML MML
dfru00363 Bisphenol A degradation SBML MML
dfru00364 Fluorobenzoate degradation SBML MML
dfru00380 Tryptophan metabolism SBML MML
dfru00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
dfru00401 Novobiocin biosynthesis SBML MML
dfru00410 beta-Alanine metabolism SBML MML
dfru00430 Taurine and hypotaurine metabolism SBML MML
dfru00440 Phosphonate and phosphinate metabolism SBML MML
dfru00450 Selenoamino acid metabolism SBML MML
dfru00460 (Undocumented) SBML MML
dfru00471 D-Glutamine and D-glutamate metabolism SBML MML
dfru00480 Glutathione metabolism SBML MML
dfru00500 Starch and sucrose metabolism SBML MML
dfru00510 (Undocumented) SBML MML
dfru00520 Amino sugar and nucleotide sugar metabolism SBML MML
dfru00521 Streptomycin biosynthesis SBML MML
dfru00530 (Undocumented) SBML MML
dfru00540 Lipopolysaccharide biosynthesis SBML MML
dfru00550 Peptidoglycan biosynthesis SBML MML
dfru00561 Glycerolipid metabolism SBML MML
dfru00562 Inositol phosphate metabolism SBML MML
dfru00564 Glycerophospholipid metabolism SBML MML
dfru00565 Ether lipid metabolism SBML MML
dfru00590 Arachidonic acid metabolism SBML MML
dfru00591 Linoleic acid metabolism SBML MML
dfru00592 alpha-Linolenic acid metabolism SBML MML
dfru00600 Sphingolipid metabolism SBML MML
dfru00620 Pyruvate metabolism SBML MML
dfru00621 (Undocumented) SBML MML
dfru00623 2,4-Dichlorobenzoate degradation SBML MML
dfru00624 1- and 2-Methylnaphthalene degradation SBML MML
dfru00626 Naphthalene and anthracene degradation SBML MML
dfru00627 1,4-Dichlorobenzene degradation SBML MML
dfru00628 Fluorene degradation SBML MML
dfru00630 Glyoxylate and dicarboxylate metabolism SBML MML
dfru00632 (Undocumented) SBML MML
dfru00640 Propanoate metabolism SBML MML
dfru00641 3-Chloroacrylic acid degradation SBML MML
dfru00643 Styrene degradation SBML MML
dfru00650 Butanoate metabolism SBML MML
dfru00660 C5-Branched dibasic acid metabolism SBML MML
dfru00670 One carbon pool by folate SBML MML
dfru00680 Methane metabolism SBML MML
dfru00710 (Undocumented) SBML MML
dfru00720 (Undocumented) SBML MML
dfru00730 Thiamine metabolism SBML MML
dfru00740 Riboflavin metabolism SBML MML
dfru00750 Vitamin B6 metabolism SBML MML
dfru00760 Nicotinate and nicotinamide metabolism SBML MML
dfru00770 Pantothenate and CoA biosynthesis SBML MML
dfru00780 Biotin metabolism SBML MML
dfru00790 Folate biosynthesis SBML MML
dfru00791 Atrazine degradation SBML MML
dfru00830 Retinol metabolism SBML MML
dfru00860 Porphyrin and chlorophyll metabolism SBML MML
dfru00900 Terpenoid backbone biosynthesis SBML MML
dfru00903 (Undocumented) SBML MML
dfru00904 (Undocumented) SBML MML
dfru00910 Nitrogen metabolism SBML MML
dfru00920 Sulfur metabolism SBML MML
dfru00930 Caprolactam degradation SBML MML
dfru00940 (Undocumented) SBML MML
dfru00944 (Undocumented) SBML MML
dfru00950 (Undocumented) SBML MML
dfru00960 (Undocumented) SBML MML
dfru00970 Aminoacyl-tRNA biosynthesis SBML MML
dfru00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
dfru00982 (Undocumented) SBML MML
dfru00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.