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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism drm: Desulfotomaculum reducens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
drm00010 Glycolysis / Gluconeogenesis SBML MML
drm00020 Citrate cycle (TCA cycle) SBML MML
drm00030 Pentose phosphate pathway SBML MML
drm00040 Pentose and glucuronate interconversions SBML MML
drm00051 Fructose and mannose metabolism SBML MML
drm00052 Galactose metabolism SBML MML
drm00061 Fatty acid biosynthesis SBML MML
drm00062 Fatty acid elongation in mitochondria SBML MML
drm00071 Fatty acid metabolism SBML MML
drm00100 (Undocumented) SBML MML
drm00120 (Undocumented) SBML MML
drm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
drm00220 (Undocumented) SBML MML
drm00230 Purine metabolism SBML MML
drm00240 Pyrimidine metabolism SBML MML
drm00251 (Undocumented) SBML MML
drm00252 (Undocumented) SBML MML
drm00260 Glycine, serine and threonine metabolism SBML MML
drm00271 (Undocumented) SBML MML
drm00272 (Undocumented) SBML MML
drm00280 Valine, leucine and isoleucine degradation SBML MML
drm00281 Geraniol degradation SBML MML
drm00290 Valine, leucine and isoleucine biosynthesis SBML MML
drm00300 Lysine biosynthesis SBML MML
drm00310 Lysine degradation SBML MML
drm00330 Arginine and proline metabolism SBML MML
drm00340 Histidine metabolism SBML MML
drm00350 Tyrosine metabolism SBML MML
drm00360 Phenylalanine metabolism SBML MML
drm00380 Tryptophan metabolism SBML MML
drm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
drm00401 Novobiocin biosynthesis SBML MML
drm00410 beta-Alanine metabolism SBML MML
drm00430 Taurine and hypotaurine metabolism SBML MML
drm00450 Selenoamino acid metabolism SBML MML
drm00471 D-Glutamine and D-glutamate metabolism SBML MML
drm00473 D-Alanine metabolism SBML MML
drm00480 Glutathione metabolism SBML MML
drm00500 Starch and sucrose metabolism SBML MML
drm00520 Amino sugar and nucleotide sugar metabolism SBML MML
drm00521 Streptomycin biosynthesis SBML MML
drm00523 Polyketide sugar unit biosynthesis SBML MML
drm00530 (Undocumented) SBML MML
drm00550 Peptidoglycan biosynthesis SBML MML
drm00561 Glycerolipid metabolism SBML MML
drm00564 Glycerophospholipid metabolism SBML MML
drm00592 alpha-Linolenic acid metabolism SBML MML
drm00620 Pyruvate metabolism SBML MML
drm00624 1- and 2-Methylnaphthalene degradation SBML MML
drm00630 Glyoxylate and dicarboxylate metabolism SBML MML
drm00632 (Undocumented) SBML MML
drm00640 Propanoate metabolism SBML MML
drm00641 3-Chloroacrylic acid degradation SBML MML
drm00650 Butanoate metabolism SBML MML
drm00660 C5-Branched dibasic acid metabolism SBML MML
drm00670 One carbon pool by folate SBML MML
drm00680 Methane metabolism SBML MML
drm00710 (Undocumented) SBML MML
drm00720 (Undocumented) SBML MML
drm00730 Thiamine metabolism SBML MML
drm00740 Riboflavin metabolism SBML MML
drm00750 Vitamin B6 metabolism SBML MML
drm00760 Nicotinate and nicotinamide metabolism SBML MML
drm00770 Pantothenate and CoA biosynthesis SBML MML
drm00780 Biotin metabolism SBML MML
drm00785 Lipoic acid metabolism SBML MML
drm00790 Folate biosynthesis SBML MML
drm00860 Porphyrin and chlorophyll metabolism SBML MML
drm00900 Terpenoid backbone biosynthesis SBML MML
drm00903 (Undocumented) SBML MML
drm00910 Nitrogen metabolism SBML MML
drm00920 Sulfur metabolism SBML MML
drm00930 Caprolactam degradation SBML MML
drm00970 Aminoacyl-tRNA biosynthesis SBML MML
drm00982 (Undocumented) SBML MML
drm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.