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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism eath: Arabidopsis thaliana (thale cress) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
eath00010 Glycolysis / Gluconeogenesis SBML MML
eath00020 Citrate cycle (TCA cycle) SBML MML
eath00030 Pentose phosphate pathway SBML MML
eath00031 (Undocumented) SBML MML
eath00040 Pentose and glucuronate interconversions SBML MML
eath00051 Fructose and mannose metabolism SBML MML
eath00052 Galactose metabolism SBML MML
eath00053 Ascorbate and aldarate metabolism SBML MML
eath00061 Fatty acid biosynthesis SBML MML
eath00062 Fatty acid elongation in mitochondria SBML MML
eath00071 Fatty acid metabolism SBML MML
eath00072 Synthesis and degradation of ketone bodies SBML MML
eath00100 (Undocumented) SBML MML
eath00120 (Undocumented) SBML MML
eath00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
eath00140 (Undocumented) SBML MML
eath00150 Androgen and estrogen metabolism SBML MML
eath00220 (Undocumented) SBML MML
eath00230 Purine metabolism SBML MML
eath00232 Caffeine metabolism SBML MML
eath00240 Pyrimidine metabolism SBML MML
eath00251 (Undocumented) SBML MML
eath00252 (Undocumented) SBML MML
eath00260 Glycine, serine and threonine metabolism SBML MML
eath00271 (Undocumented) SBML MML
eath00272 (Undocumented) SBML MML
eath00280 Valine, leucine and isoleucine degradation SBML MML
eath00281 Geraniol degradation SBML MML
eath00290 Valine, leucine and isoleucine biosynthesis SBML MML
eath00300 Lysine biosynthesis SBML MML
eath00310 Lysine degradation SBML MML
eath00330 Arginine and proline metabolism SBML MML
eath00340 Histidine metabolism SBML MML
eath00350 Tyrosine metabolism SBML MML
eath00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
eath00360 Phenylalanine metabolism SBML MML
eath00361 gamma-Hexachlorocyclohexane degradation SBML MML
eath00362 (Undocumented) SBML MML
eath00363 Bisphenol A degradation SBML MML
eath00364 Fluorobenzoate degradation SBML MML
eath00380 Tryptophan metabolism SBML MML
eath00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
eath00401 Novobiocin biosynthesis SBML MML
eath00410 beta-Alanine metabolism SBML MML
eath00430 Taurine and hypotaurine metabolism SBML MML
eath00440 Phosphonate and phosphinate metabolism SBML MML
eath00450 Selenoamino acid metabolism SBML MML
eath00460 (Undocumented) SBML MML
eath00471 D-Glutamine and D-glutamate metabolism SBML MML
eath00480 Glutathione metabolism SBML MML
eath00500 Starch and sucrose metabolism SBML MML
eath00510 (Undocumented) SBML MML
eath00520 Amino sugar and nucleotide sugar metabolism SBML MML
eath00521 Streptomycin biosynthesis SBML MML
eath00523 Polyketide sugar unit biosynthesis SBML MML
eath00530 (Undocumented) SBML MML
eath00540 Lipopolysaccharide biosynthesis SBML MML
eath00550 Peptidoglycan biosynthesis SBML MML
eath00561 Glycerolipid metabolism SBML MML
eath00562 Inositol phosphate metabolism SBML MML
eath00564 Glycerophospholipid metabolism SBML MML
eath00565 Ether lipid metabolism SBML MML
eath00590 Arachidonic acid metabolism SBML MML
eath00591 Linoleic acid metabolism SBML MML
eath00592 alpha-Linolenic acid metabolism SBML MML
eath00600 Sphingolipid metabolism SBML MML
eath00620 Pyruvate metabolism SBML MML
eath00624 1- and 2-Methylnaphthalene degradation SBML MML
eath00625 (Undocumented) SBML MML
eath00626 Naphthalene and anthracene degradation SBML MML
eath00627 1,4-Dichlorobenzene degradation SBML MML
eath00630 Glyoxylate and dicarboxylate metabolism SBML MML
eath00631 1,2-Dichloroethane degradation SBML MML
eath00632 (Undocumented) SBML MML
eath00640 Propanoate metabolism SBML MML
eath00641 3-Chloroacrylic acid degradation SBML MML
eath00642 Ethylbenzene degradation SBML MML
eath00643 Styrene degradation SBML MML
eath00650 Butanoate metabolism SBML MML
eath00660 C5-Branched dibasic acid metabolism SBML MML
eath00670 One carbon pool by folate SBML MML
eath00680 Methane metabolism SBML MML
eath00710 (Undocumented) SBML MML
eath00720 (Undocumented) SBML MML
eath00730 Thiamine metabolism SBML MML
eath00740 Riboflavin metabolism SBML MML
eath00750 Vitamin B6 metabolism SBML MML
eath00760 Nicotinate and nicotinamide metabolism SBML MML
eath00770 Pantothenate and CoA biosynthesis SBML MML
eath00780 Biotin metabolism SBML MML
eath00790 Folate biosynthesis SBML MML
eath00830 Retinol metabolism SBML MML
eath00860 Porphyrin and chlorophyll metabolism SBML MML
eath00900 Terpenoid backbone biosynthesis SBML MML
eath00901 (Undocumented) SBML MML
eath00902 Monoterpenoid biosynthesis SBML MML
eath00903 (Undocumented) SBML MML
eath00904 (Undocumented) SBML MML
eath00906 Carotenoid biosynthesis SBML MML
eath00908 (Undocumented) SBML MML
eath00910 Nitrogen metabolism SBML MML
eath00920 Sulfur metabolism SBML MML
eath00930 Caprolactam degradation SBML MML
eath00940 (Undocumented) SBML MML
eath00941 (Undocumented) SBML MML
eath00944 (Undocumented) SBML MML
eath00950 (Undocumented) SBML MML
eath00960 (Undocumented) SBML MML
eath00970 Aminoacyl-tRNA biosynthesis SBML MML
eath00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
eath00981 (Undocumented) SBML MML
eath00982 (Undocumented) SBML MML
eath00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.